9 items (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_14492	GATA-type domain-containing protein. (1142 aa)
	A6R68_20637	Uncharacterized protein. (480 aa)
	A6R68_23138	Uncharacterized protein. (204 aa)
	A6R68_06411	Uncharacterized protein. (685 aa)
	A6R68_12494	Uncharacterized protein. (404 aa)
	A6R68_18196	GATA-type domain-containing protein. (266 aa)
	A6R68_08929	Uncharacterized protein. (380 aa)
	A6R68_20655	Uncharacterized protein. (464 aa)
	A6R68_21324	Uncharacterized protein. (695 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_06411	A6R68_08929	A0A1A6GIA6	A0A1A6G3I9	Uncharacterized protein.	Uncharacterized protein.	0.409
A6R68_08929	A6R68_06411	A0A1A6G3I9	A0A1A6GIA6	Uncharacterized protein.	Uncharacterized protein.	0.409
A6R68_08929	A6R68_12494	A0A1A6G3I9	A0A1A6H3N1	Uncharacterized protein.	Uncharacterized protein.	0.720
A6R68_08929	A6R68_20637	A0A1A6G3I9	A0A1A6HRS5	Uncharacterized protein.	Uncharacterized protein.	0.532
A6R68_08929	A6R68_20655	A0A1A6G3I9	A0A1A6HRP1	Uncharacterized protein.	Uncharacterized protein.	0.760
A6R68_08929	A6R68_23138	A0A1A6G3I9	A0A1A6HY00	Uncharacterized protein.	Uncharacterized protein.	0.726
A6R68_12494	A6R68_08929	A0A1A6H3N1	A0A1A6G3I9	Uncharacterized protein.	Uncharacterized protein.	0.720
A6R68_12494	A6R68_20637	A0A1A6H3N1	A0A1A6HRS5	Uncharacterized protein.	Uncharacterized protein.	0.722
A6R68_12494	A6R68_21324	A0A1A6H3N1	A0A1A6HR43	Uncharacterized protein.	Uncharacterized protein.	0.809
A6R68_20637	A6R68_08929	A0A1A6HRS5	A0A1A6G3I9	Uncharacterized protein.	Uncharacterized protein.	0.532
A6R68_20637	A6R68_12494	A0A1A6HRS5	A0A1A6H3N1	Uncharacterized protein.	Uncharacterized protein.	0.722
A6R68_20637	A6R68_20655	A0A1A6HRS5	A0A1A6HRP1	Uncharacterized protein.	Uncharacterized protein.	0.834
A6R68_20637	A6R68_23138	A0A1A6HRS5	A0A1A6HY00	Uncharacterized protein.	Uncharacterized protein.	0.722
A6R68_20655	A6R68_08929	A0A1A6HRP1	A0A1A6G3I9	Uncharacterized protein.	Uncharacterized protein.	0.760
A6R68_20655	A6R68_20637	A0A1A6HRP1	A0A1A6HRS5	Uncharacterized protein.	Uncharacterized protein.	0.834
A6R68_20655	A6R68_21324	A0A1A6HRP1	A0A1A6HR43	Uncharacterized protein.	Uncharacterized protein.	0.720
A6R68_21324	A6R68_12494	A0A1A6HR43	A0A1A6H3N1	Uncharacterized protein.	Uncharacterized protein.	0.809
A6R68_21324	A6R68_20655	A0A1A6HR43	A0A1A6HRP1	Uncharacterized protein.	Uncharacterized protein.	0.720
A6R68_21324	A6R68_23138	A0A1A6HR43	A0A1A6HY00	Uncharacterized protein.	Uncharacterized protein.	0.805
A6R68_23138	A6R68_08929	A0A1A6HY00	A0A1A6G3I9	Uncharacterized protein.	Uncharacterized protein.	0.726