(85 nodes) Renal cell carcinoma network (Neotoma lepida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6R68_12994	Uncharacterized protein. (153 aa)
	A6R68_22418	SH2 domain-containing protein. (102 aa)
	A6R68_22424	Uncharacterized protein. (124 aa)
	A6R68_23564	TGF_BETA_2 domain-containing protein. (486 aa)
	A6R68_24131	Uncharacterized protein. (306 aa)
	A6R68_20649	BHLH domain-containing protein. (418 aa)
	A6R68_20747	Uncharacterized protein. (67 aa)
	A6R68_20292	Uncharacterized protein. (147 aa)
	A6R68_20227	Uncharacterized protein. (204 aa)
	A6R68_20675	Uncharacterized protein. (180 aa)
	A6R68_21315	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1033 aa)
	A6R68_21759	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (312 aa)
	A6R68_18594	RING-type domain-containing protein. (105 aa)
	A6R68_18251	Uncharacterized protein. (144 aa)
	A6R68_18426	Uncharacterized protein. (764 aa)
	A6R68_18987	CULLIN_2 domain-containing protein; Belongs to the cullin family. (708 aa)
	A6R68_18767	Uncharacterized protein. (137 aa)
	A6R68_18805	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (498 aa)
	A6R68_18691	Uncharacterized protein. (189 aa)
	A6R68_18698	Uncharacterized protein. (782 aa)
	A6R68_19098	Non-specific serine/threonine protein kinase. (575 aa)
	A6R68_19337	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (410 aa)
	A6R68_19339	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (229 aa)
	A6R68_16075	Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
	A6R68_16954	Uncharacterized protein. (723 aa)
	A6R68_17903	Uncharacterized protein. (766 aa)
	A6R68_17913	FumaraseC_C domain-containing protein. (98 aa)
	A6R68_17988	Uncharacterized protein. (151 aa)
	A6R68_17677	Uncharacterized protein. (389 aa)
	A6R68_13996	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1012 aa)
	A6R68_15138	Uncharacterized protein. (252 aa)
	A6R68_15217	Ubiquitin-like domain-containing protein. (113 aa)
	A6R68_12102	Non-specific serine/threonine protein kinase. (664 aa)
	A6R68_08192	Sema domain-containing protein. (307 aa)
	A6R68_12078	Lyase_1 domain-containing protein. (42 aa)
	A6R68_12862	CRIB domain-containing protein. (171 aa)
	A6R68_12217	Protein kinase domain-containing protein. (87 aa)
	A6R68_13079	Uncharacterized protein. (356 aa)
	A6R68_13143	Uncharacterized protein. (659 aa)
	A6R68_13142	Uncharacterized protein. (479 aa)
	A6R68_13425	Uncharacterized protein. (488 aa)
	A6R68_00554	Uncharacterized protein. (170 aa)
	A6R68_00936	SH2 domain-containing protein. (283 aa)
	A6R68_01022	BZIP domain-containing protein; Belongs to the bZIP family. (330 aa)
	A6R68_01147	PH domain-containing protein. (508 aa)
	A6R68_00653	Uncharacterized protein. (184 aa)
	A6R68_00746	Uncharacterized protein. (1848 aa)
	A6R68_01421	Uncharacterized protein. (89 aa)
	A6R68_02457	Uncharacterized protein. (967 aa)
	A6R68_02215	Lyase_1 domain-containing protein. (61 aa)
	A6R68_02064	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (241 aa)
	A6R68_02611	Uncharacterized protein. (2312 aa)
	A6R68_03399	Mitogen-activated protein kinase. (244 aa)
	A6R68_04607	Fe2OG dioxygenase domain-containing protein. (88 aa)
	A6R68_04482	Protein kinase domain-containing protein. (368 aa)
	A6R68_04048	Peptidase S1 domain-containing protein. (146 aa)
	A6R68_03991	Uncharacterized protein. (165 aa)
	A6R68_05137	Uncharacterized protein. (119 aa)
	A6R68_05534	Lyase_1 domain-containing protein. (182 aa)
	A6R68_05136	Uncharacterized protein. (98 aa)
	A6R68_05294	Protein kinase domain-containing protein. (143 aa)
	A6R68_06293	Uncharacterized protein. (311 aa)
	A6R68_05572	Uncharacterized protein. (68 aa)
	A6R68_06373	Uncharacterized protein. (113 aa)
	A6R68_06583	Uncharacterized protein. (490 aa)
	A6R68_07056	Cullin_Nedd8 domain-containing protein. (101 aa)
	A6R68_07237	N-terminal Ras-GEF domain-containing protein. (241 aa)
	A6R68_06865	Uncharacterized protein. (181 aa)
	A6R68_07391	Uncharacterized protein. (454 aa)
	A6R68_07672	Uncharacterized protein. (168 aa)
	A6R68_07908	Uncharacterized protein. (323 aa)
	A6R68_08314	Uncharacterized protein. (191 aa)
	A6R68_08705	Uncharacterized protein. (217 aa)
	A6R68_08878	UDENN FLCN/SMCR8-type domain-containing protein. (586 aa)
	A6R68_08540	Protein kinase domain-containing protein. (254 aa)
	A6R68_09478	TGF_BETA_2 domain-containing protein. (495 aa)
	A6R68_09941	Uncharacterized protein. (132 aa)
	A6R68_09949	Protein kinase domain-containing protein. (210 aa)
	A6R68_10020	Uncharacterized protein. (378 aa)
	A6R68_10465	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (500 aa)
	A6R68_11288	Mitogen-activated protein kinase. (325 aa)
	A6R68_10962	Fe2OG dioxygenase domain-containing protein. (418 aa)
	A6R68_11597	PAS domain-containing protein. (497 aa)
	A6R68_11612	Protein kinase domain-containing protein. (390 aa)
	A6R68_11899	Protein kinase domain-containing protein. (128 aa)

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00554	A6R68_00653	A0A1A6GZ65	A0A1A6GWT8	Uncharacterized protein.	Uncharacterized protein.	0.621
A6R68_00554	A6R68_00936	A0A1A6GZ65	A0A1A6GY32	Uncharacterized protein.	SH2 domain-containing protein.	0.895
A6R68_00554	A6R68_01022	A0A1A6GZ65	A0A1A6GXV6	Uncharacterized protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.417
A6R68_00554	A6R68_01147	A0A1A6GZ65	A0A1A6GXH8	Uncharacterized protein.	PH domain-containing protein.	0.734
A6R68_00554	A6R68_01421	A0A1A6GZ65	A0A1A6GUM5	Uncharacterized protein.	Uncharacterized protein.	0.605
A6R68_00554	A6R68_02064	A0A1A6GZ65	A0A1A6GTE5	Uncharacterized protein.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.551
A6R68_00554	A6R68_03399	A0A1A6GZ65	A0A1A6GQU9	Uncharacterized protein.	Mitogen-activated protein kinase.	0.857
A6R68_00554	A6R68_04048	A0A1A6GZ65	A0A1A6GMH3	Uncharacterized protein.	Peptidase S1 domain-containing protein.	0.583
A6R68_00554	A6R68_04482	A0A1A6GZ65	A0A1A6GMN6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.933
A6R68_00554	A6R68_05294	A0A1A6GZ65	A0A1A6GIX5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.815
A6R68_00554	A6R68_05572	A0A1A6GZ65	A0A1A6GHY6	Uncharacterized protein.	Uncharacterized protein.	0.821
A6R68_00554	A6R68_06373	A0A1A6GZ65	A0A1A6GFT7	Uncharacterized protein.	Uncharacterized protein.	0.819
A6R68_00554	A6R68_06583	A0A1A6GZ65	A0A1A6GF83	Uncharacterized protein.	Uncharacterized protein.	0.910
A6R68_00554	A6R68_06865	A0A1A6GZ65	A0A1A6GEC7	Uncharacterized protein.	Uncharacterized protein.	0.833
A6R68_00554	A6R68_07237	A0A1A6GZ65	A0A1A6GEN3	Uncharacterized protein.	N-terminal Ras-GEF domain-containing protein.	0.947
A6R68_00554	A6R68_07391	A0A1A6GZ65	A0A1A6GE87	Uncharacterized protein.	Uncharacterized protein.	0.923
A6R68_00554	A6R68_07672	A0A1A6GZ65	A0A1A6GD59	Uncharacterized protein.	Uncharacterized protein.	0.583
A6R68_00554	A6R68_07908	A0A1A6GZ65	A0A1A6GCK4	Uncharacterized protein.	Uncharacterized protein.	0.598
A6R68_00554	A6R68_08192	A0A1A6GZ65	A0A1A6H6K6	Uncharacterized protein.	Sema domain-containing protein.	0.890
A6R68_00554	A6R68_08314	A0A1A6GZ65	A0A1A6G5B7	Uncharacterized protein.	Uncharacterized protein.	0.837