STRINGSTRING
ytfN ytfN yb2331 yb2331 yb1688 yb1688 ychA ychA ftsL ftsL htrA htrA hns hns cls cls yciA yciA yciB yciB yciC yciC ompA ompA ompF ompF ftsB ftsB dsbA dsbA sirA sirA mltA mltA yccK yccK ppiD ppiD ybeD ybeD smg smg yheL yheL yheM yheM yheN yheN yhfC yhfC yeeX yeeX yfgM yfgM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ytfNHypothetical protein. (970 aa)
yb2331Hypothetical protein; Belongs to the UPF0115 family. (186 aa)
yb1688Hypothetical protein. (360 aa)
ychAHypothetical protein; Transcriptional regulator; Belongs to the UPF0162 family. (269 aa)
ftsLCell division protein; Essential cell division protein; Belongs to the FtsL family. (84 aa)
htrAProtease Do precursor; Belongs to the peptidase S1C family. (478 aa)
hnsDNA-binding protein H-ns; A DNA-binding protein implicated in transcriptional repression and chromosome organization and compaction. Binds nucleation sites in AT-rich DNA and bridges them, forming higher-order nucleoprotein complexes and condensing the chromosome. A subset of genes are repressed by H-NS in association with other proteins (By similarity). (135 aa)
clsCardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. (486 aa)
yciAacyl-CoA thioesterase (YciA); Belongs to the acyl coenzyme A hydrolase family. (135 aa)
yciBPredicted inner membrane protein (YciB); Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (177 aa)
yciCPredicted inner membrane protein (YciC). (247 aa)
ompAOuter membrane protein A precursor; With TolR probably plays a role in maintaining the position of the peptidoglycan cell wall in the periplasm. Acts as a porin with low permeability that allows slow penetration of small solutes; an internal gate slows down solute passage; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. OmpA family. (349 aa)
ompFOmpF-like porin; Forms pores that allow passive diffusion of small molecules across the membrane. (382 aa)
ftsBEssential cell division protein FtsB (YgbQ); Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly extracellular; Belongs to the FtsB family. (71 aa)
dsbAThiol:disulfide interchange protein DsbA precursor; Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins (By similarity). (212 aa)
sirASulfur transfer protein (YhhP); Sulfur carrier protein involved in sulfur trafficking in the cell. Part of a sulfur-relay system required for 2-thiolation during synthesis of 2-thiouridine of the modified wobble base 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) in tRNA. Interacts with IscS and stimulates its cysteine desulfurase activity. Accepts an activated sulfur from IscS, which is then transferred to TusD, and thus determines the direction of sulfur flow from IscS to 2-thiouridine formation. Also appears to be involved in sulfur transfer for the biosynthesis of molybdopterin. (76 aa)
mltAMembrane-bound lytic murein transglycosylase A precursor; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity). (359 aa)
yccKHypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from TusD (By similarity). (114 aa)
ppiDPeptidyl-prolyl cis-trans isomerase D; PPIases accelerate the folding of proteins. (623 aa)
ybeDHypothetical protein; Belongs to the UPF0250 family. (87 aa)
smgSmg protein; Belongs to the Smg family. (157 aa)
yheLHypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. (95 aa)
yheMHypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. (119 aa)
yheNHypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE. (128 aa)
yhfCYhfC MFS transporter. (388 aa)
yeeXHypothetical protein; Belongs to the UPF0265 family. (102 aa)
yfgMHypothetical protein. (193 aa)
Your Current Organism:
Buchnera aphidicola 5A
NCBI taxonomy Id: 563178
Other names: B. aphidicola str. 5A (Acyrthosiphon pisum), Buchnera aphidicola str. 5A (Acyrthosiphon pisum), Buchnera aphidicola strain 5A (Acyrthosiphon pisum)
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