(15 nodes) PAS-associated, C-terminal network (Xanthomonas bromi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SBV50036.1	Histidine kinase-response regulator hybrid protein. (690 aa)
	SBV49965.1	Chemotaxis protein. (660 aa)
	SBV49587.1	Sensor histidine kinase. (422 aa)
	SBV53003.1	Two-component system sensor protein. (1130 aa)
	SBV50962.1	Hypothetical protein. (928 aa)
	SBV51101.1	Hypothetical protein. (801 aa)
	SBV51365.1	Sensor histidine kinase. (677 aa)
	SBV50786.1	Hypothetical protein. (598 aa)
	SBV50703.1	Histidine kinase-response regulator hybrid protein. (925 aa)
	SBV50657.1	Histidine kinase. (540 aa)
	SBV50520.1	Two-component system sensor protein. (335 aa)
	SBV51681.1	Two-component system sensor protein. (1364 aa)
	SBV52079.1	c-di-GMP phosphodiesterase A. (786 aa)
	SBV51925.1	Two-component system sensor protein. (394 aa)
	SBV50039.1	Histidine kinase-response regulator hybrid protein. (951 aa)

Your Current Organism:

Xanthomonas bromi

NCBI taxonomy Id: 56449
Other names: ICMP 12545, LMG 947, LMG:947, X. bromi

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SBV49587.1	SBV49965.1	XBLMG947_0359	XBLMG947_0740	Sensor histidine kinase.	Chemotaxis protein.	0.989
SBV49587.1	SBV50036.1	XBLMG947_0359	XBLMG947_0812	Sensor histidine kinase.	Histidine kinase-response regulator hybrid protein.	0.965
SBV49587.1	SBV50039.1	XBLMG947_0359	XBLMG947_0815	Sensor histidine kinase.	Histidine kinase-response regulator hybrid protein.	0.999
SBV49587.1	SBV50520.1	XBLMG947_0359	XBLMG947_1300	Sensor histidine kinase.	Two-component system sensor protein.	0.957
SBV49587.1	SBV50657.1	XBLMG947_0359	XBLMG947_1438	Sensor histidine kinase.	Histidine kinase.	0.999
SBV49587.1	SBV50703.1	XBLMG947_0359	XBLMG947_1485	Sensor histidine kinase.	Histidine kinase-response regulator hybrid protein.	0.969
SBV49587.1	SBV50786.1	XBLMG947_0359	XBLMG947_1568	Sensor histidine kinase.	Hypothetical protein.	0.997
SBV49587.1	SBV50962.1	XBLMG947_0359	XBLMG947_1745	Sensor histidine kinase.	Hypothetical protein.	0.958
SBV49587.1	SBV51101.1	XBLMG947_0359	XBLMG947_1885	Sensor histidine kinase.	Hypothetical protein.	0.703
SBV49587.1	SBV51365.1	XBLMG947_0359	XBLMG947_2154	Sensor histidine kinase.	Sensor histidine kinase.	0.999
SBV49587.1	SBV51681.1	XBLMG947_0359	XBLMG947_2471	Sensor histidine kinase.	Two-component system sensor protein.	0.999
SBV49587.1	SBV51925.1	XBLMG947_0359	XBLMG947_2715	Sensor histidine kinase.	Two-component system sensor protein.	0.990
SBV49587.1	SBV52079.1	XBLMG947_0359	XBLMG947_2869	Sensor histidine kinase.	c-di-GMP phosphodiesterase A.	0.996
SBV49587.1	SBV53003.1	XBLMG947_0359	XBLMG947_3806	Sensor histidine kinase.	Two-component system sensor protein.	0.999
SBV49965.1	SBV49587.1	XBLMG947_0740	XBLMG947_0359	Chemotaxis protein.	Sensor histidine kinase.	0.989
SBV49965.1	SBV50036.1	XBLMG947_0740	XBLMG947_0812	Chemotaxis protein.	Histidine kinase-response regulator hybrid protein.	0.914
SBV49965.1	SBV50039.1	XBLMG947_0740	XBLMG947_0815	Chemotaxis protein.	Histidine kinase-response regulator hybrid protein.	0.962
SBV49965.1	SBV50520.1	XBLMG947_0740	XBLMG947_1300	Chemotaxis protein.	Two-component system sensor protein.	0.650
SBV49965.1	SBV50657.1	XBLMG947_0740	XBLMG947_1438	Chemotaxis protein.	Histidine kinase.	0.962
SBV49965.1	SBV50703.1	XBLMG947_0740	XBLMG947_1485	Chemotaxis protein.	Histidine kinase-response regulator hybrid protein.	0.736