10 items (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJC45984.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	AJC45985.1	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AJC45986.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AJC45987.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AJC46567.1	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AJC46568.1	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AJC46569.1	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	mlaD	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	AJC46571.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AJC46572.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45984.1	AJC45985.1	SB85_09580	SB85_09585	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJC45984.1	AJC45986.1	SB85_09580	SB85_09590	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJC45984.1	AJC45987.1	SB85_09580	SB85_09595	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AJC45984.1	AJC46568.1	SB85_09580	SB85_13195	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJC45984.1	AJC46569.1	SB85_09580	SB85_13200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AJC45984.1	AJC46571.1	SB85_09580	SB85_13210	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJC45984.1	AJC46572.1	SB85_09580	SB85_13215	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AJC45984.1	mlaD	SB85_09580	SB85_13205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJC45985.1	AJC45984.1	SB85_09585	SB85_09580	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJC45985.1	AJC45986.1	SB85_09585	SB85_09590	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJC45985.1	AJC45987.1	SB85_09585	SB85_09595	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJC45985.1	AJC46568.1	SB85_09585	SB85_13195	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
AJC45985.1	AJC46569.1	SB85_09585	SB85_13200	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
AJC45985.1	AJC46571.1	SB85_09585	SB85_13210	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJC45985.1	AJC46572.1	SB85_09585	SB85_13215	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJC45985.1	mlaD	SB85_09585	SB85_13205	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJC45986.1	AJC45984.1	SB85_09590	SB85_09580	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJC45986.1	AJC45985.1	SB85_09590	SB85_09585	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJC45986.1	AJC45987.1	SB85_09590	SB85_09595	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJC45986.1	AJC46568.1	SB85_09590	SB85_13195	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879