5 items (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJC46568.1	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AJC46569.1	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	mlaD	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	AJC46571.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AJC46572.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC46568.1	AJC46569.1	SB85_13195	SB85_13200	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AJC46568.1	AJC46571.1	SB85_13195	SB85_13210	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJC46568.1	AJC46572.1	SB85_13195	SB85_13215	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJC46568.1	mlaD	SB85_13195	SB85_13205	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJC46569.1	AJC46568.1	SB85_13200	SB85_13195	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AJC46569.1	AJC46571.1	SB85_13200	SB85_13210	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJC46569.1	AJC46572.1	SB85_13200	SB85_13215	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AJC46569.1	mlaD	SB85_13200	SB85_13205	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJC46571.1	AJC46568.1	SB85_13210	SB85_13195	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJC46571.1	AJC46569.1	SB85_13210	SB85_13200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJC46571.1	AJC46572.1	SB85_13210	SB85_13215	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJC46571.1	mlaD	SB85_13210	SB85_13205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJC46572.1	AJC46568.1	SB85_13215	SB85_13195	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJC46572.1	AJC46569.1	SB85_13215	SB85_13200	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AJC46572.1	AJC46571.1	SB85_13215	SB85_13210	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJC46572.1	mlaD	SB85_13215	SB85_13205	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
mlaD	AJC46568.1	SB85_13205	SB85_13195	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
mlaD	AJC46569.1	SB85_13205	SB85_13200	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
mlaD	AJC46571.1	SB85_13205	SB85_13210	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
mlaD	AJC46572.1	SB85_13205	SB85_13215	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994