19 items (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	coq7	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. (214 aa)
	AJC46707.1	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	pobA	Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	AJC46596.1	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	AJC46425.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	AJC46368.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AJC47595.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	salA	Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AJC45880.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (462 aa)
	AJC45837.1	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	AJC45496.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	AJC45460.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	kmo	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily. (454 aa)
	AJC44772.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AJC47388.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	AJC47736.1	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	AJC46888.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	AJC46835.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	AJC47153.1	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44772.1	AJC45880.1	SB85_02330	SB85_08940	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.490
AJC44772.1	AJC47388.1	SB85_02330	SB85_18120	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AJC45460.1	AJC45880.1	SB85_06490	SB85_08940	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.459
AJC45460.1	AJC47388.1	SB85_06490	SB85_18120	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJC45837.1	coq7	SB85_08670	SB85_11135	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.	0.934
AJC45880.1	AJC44772.1	SB85_08940	SB85_02330	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
AJC45880.1	AJC45460.1	SB85_08940	SB85_06490	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AJC45880.1	AJC47388.1	SB85_08940	SB85_18120	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
AJC46368.1	AJC46888.1	SB85_11965	SB85_15250	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AJC46596.1	AJC47736.1	SB85_13360	SB85_17620	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJC46707.1	pobA	SB85_14095	SB85_14075	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
AJC46888.1	AJC46368.1	SB85_15250	SB85_11965	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AJC47388.1	AJC44772.1	SB85_18120	SB85_02330	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AJC47388.1	AJC45460.1	SB85_18120	SB85_06490	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJC47388.1	AJC45880.1	SB85_18120	SB85_08940	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.754
AJC47736.1	AJC46596.1	SB85_17620	SB85_13360	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
coq7	AJC45837.1	SB85_11135	SB85_08670	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
pobA	AJC46707.1	SB85_14075	SB85_14095	Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653