7 items (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJC46144.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	AJC47520.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	AJC45199.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	AJC44832.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AJC46702.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	AJC47181.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AJC47256.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44832.1	AJC45199.1	SB85_02695	SB85_04970	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
AJC44832.1	AJC46144.1	SB85_02695	SB85_10540	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AJC44832.1	AJC47256.1	SB85_02695	SB85_17380	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJC45199.1	AJC44832.1	SB85_04970	SB85_02695	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
AJC45199.1	AJC46144.1	SB85_04970	SB85_10540	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJC46144.1	AJC44832.1	SB85_10540	SB85_02695	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AJC46144.1	AJC45199.1	SB85_10540	SB85_04970	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJC46144.1	AJC47256.1	SB85_10540	SB85_17380	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AJC47256.1	AJC44832.1	SB85_17380	SB85_02695	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJC47256.1	AJC46144.1	SB85_17380	SB85_10540	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403