5 items (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJC47680.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	AJC47535.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	AJC45986.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	mlaD	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	AJC46726.1	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45986.1	mlaD	SB85_09590	SB85_13205	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJC46726.1	AJC47680.1	SB85_14205	SB85_14260	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJC47680.1	AJC46726.1	SB85_14260	SB85_14205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
mlaD	AJC45986.1	SB85_13205	SB85_09590	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908