(32 nodes) Porphyrin and chlorophyll metabolism network (Micromonas pusilla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HEME1	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (410 aa)
	HEMD	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (348 aa)
	C1MIL5_MICPC	Predicted protein. (524 aa)
	CHLL1	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (410 aa)
	HEME4	Uroporphyrinogen decarboxylase. (414 aa)
	HEMC	Porphobilinogen deaminase, chloroplast. (376 aa)
	HEMB	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (388 aa)
	CHLH2	Magnesium-chelatase subunit chlh-like protein chloroplast. (1299 aa)
	CHLH1	Magnesium-chelatase subunit chlH chloroplast. (1403 aa)
	PORA	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (423 aa)
	CHLM	Magnesium-protoporphyrin IX methyltransferase chloroplast. (330 aa)
	CHLG	Chlorophyll synthetase. (361 aa)
	C1MSV1_MICPC	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (654 aa)
	PORB/C	Light-dependent protochlorophyllide oxido-reductase. (435 aa)
	CHLD1	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (694 aa)
	C1MVN3_MICPC	Predicted protein. (380 aa)
	DVR	3,8-divinyl protochlorophyllide a 8-vinyl reductase. (414 aa)
	CAO	Chlorophyll a oxygenase. (390 aa)
	C1MZM1_MICPC	Predicted protein. (370 aa)
	C1N0C7_MICPC	Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (275 aa)
	HEMA	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family. (454 aa)
	HEMH	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (542 aa)
	HEMG	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (541 aa)
	C1N2K6_MICPC	Predicted protein. (292 aa)
	HEMF	Coproporphyrinogen III oxidase chloroplast. (380 aa)
	CHLL2	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (428 aa)
	HEML	Glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (476 aa)
	C1N661_MICPC	Predicted protein. (139 aa)
	C1N6J1_MICPC	Predicted protein. (414 aa)
	UPM1	Uroporphyrin III methylase; Belongs to the precorrin methyltransferase family. (430 aa)
	HEME2	Uroporphyrinogen decarboxylase chloroplast. (366 aa)
	C1N9H7_MICPC	Coproporphyrinogen III oxidase. (402 aa)

Your Current Organism:

Micromonas pusilla

NCBI taxonomy Id: 564608
Other names: M. pusilla CCMP1545, Micromonas pusilla CCMP1545

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1MIL5_MICPC	C1MZM1_MICPC	C1MIL5	C1MZM1	Predicted protein.	Predicted protein.	0.916
C1MIL5_MICPC	C1N0C7_MICPC	C1MIL5	C1N0C7	Predicted protein.	Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.935
C1MIL5_MICPC	C1N6J1_MICPC	C1MIL5	C1N6J1	Predicted protein.	Predicted protein.	0.410
C1MIL5_MICPC	CHLG	C1MIL5	C1MSS6	Predicted protein.	Chlorophyll synthetase.	0.947
C1MIL5_MICPC	CHLH1	C1MIL5	C1MQ15	Predicted protein.	Magnesium-chelatase subunit chlH chloroplast.	0.479
C1MIL5_MICPC	CHLM	C1MIL5	C1MQQ8	Predicted protein.	Magnesium-protoporphyrin IX methyltransferase chloroplast.	0.477
C1MIL5_MICPC	DVR	C1MIL5	C1MYE3	Predicted protein.	3,8-divinyl protochlorophyllide a 8-vinyl reductase.	0.479
C1MIL5_MICPC	HEMD	C1MIL5	C1MHK6	Predicted protein.	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.	0.479
C1MSV1_MICPC	C1MVN3_MICPC	C1MSV1	C1MVN3	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Predicted protein.	0.471
C1MSV1_MICPC	C1N6J1_MICPC	C1MSV1	C1N6J1	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Predicted protein.	0.500
C1MSV1_MICPC	CHLD1	C1MSV1	C1MUK3	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	0.904
C1MSV1_MICPC	CHLG	C1MSV1	C1MSS6	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Chlorophyll synthetase.	0.612
C1MSV1_MICPC	CHLH1	C1MSV1	C1MQ15	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Magnesium-chelatase subunit chlH chloroplast.	0.972
C1MSV1_MICPC	CHLH2	C1MSV1	C1MPP7	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Magnesium-chelatase subunit chlh-like protein chloroplast.	0.966
C1MSV1_MICPC	CHLL1	C1MSV1	C1MKH7	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	0.943
C1MSV1_MICPC	CHLL2	C1MSV1	C1N4V0	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	0.943
C1MSV1_MICPC	CHLM	C1MSV1	C1MQQ8	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Magnesium-protoporphyrin IX methyltransferase chloroplast.	0.969
C1MSV1_MICPC	HEMA	C1MSV1	C1N0N8	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.	0.487
C1MSV1_MICPC	HEMG	C1MSV1	C1N1S5	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.954
C1MSV1_MICPC	HEMH	C1MSV1	C1N107	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	0.931