(11 nodes) Fatty acid degradation network (Geoglobus acetivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GACE_0093	3-ketoacyl-CoA thiolase. (424 aa)
	GACE_0380	Long-chain-fatty-acid--CoA ligase. (570 aa)
	GACE_0568	Long-chain-fatty-acid--CoA ligase. (575 aa)
	GACE_0723	3-ketoacyl-CoA thiolase. (393 aa)
	GACE_0766	3-ketoacyl-CoA thiolase. (398 aa)
	GACE_0785	Benzoate-CoA ligase. (554 aa)
	GACE_0794	acetyl-CoA acetyltransferase. (391 aa)
	GACE_1175	3-ketoacyl-CoA thiolase. (384 aa)
	GACE_1413	Glutaryl-CoA dehydrogenase. (398 aa)
	GACE_1501	Long-chain-fatty-acid--CoA ligase. (596 aa)
	GACE_1692	Acetyl-CoA C-acyltransferase. (394 aa)

Your Current Organism:

Geoglobus acetivorans

NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GACE_0093	GACE_0723	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase.	0.613
GACE_0093	GACE_0766	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase.	0.612
GACE_0093	GACE_0794	3-ketoacyl-CoA thiolase.	acetyl-CoA acetyltransferase.	0.612
GACE_0093	GACE_1175	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase.	0.612
GACE_0093	GACE_1413	3-ketoacyl-CoA thiolase.	Glutaryl-CoA dehydrogenase.	0.551
GACE_0093	GACE_1692	3-ketoacyl-CoA thiolase.	Acetyl-CoA C-acyltransferase.	0.610
GACE_0380	GACE_0568	Long-chain-fatty-acid--CoA ligase.	Long-chain-fatty-acid--CoA ligase.	0.802
GACE_0380	GACE_0785	Long-chain-fatty-acid--CoA ligase.	Benzoate-CoA ligase.	0.814
GACE_0380	GACE_1501	Long-chain-fatty-acid--CoA ligase.	Long-chain-fatty-acid--CoA ligase.	0.824
GACE_0568	GACE_0380	Long-chain-fatty-acid--CoA ligase.	Long-chain-fatty-acid--CoA ligase.	0.802
GACE_0568	GACE_0785	Long-chain-fatty-acid--CoA ligase.	Benzoate-CoA ligase.	0.817
GACE_0568	GACE_1501	Long-chain-fatty-acid--CoA ligase.	Long-chain-fatty-acid--CoA ligase.	0.823
GACE_0723	GACE_0093	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase.	0.613
GACE_0723	GACE_0766	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase.	0.612
GACE_0723	GACE_0794	3-ketoacyl-CoA thiolase.	acetyl-CoA acetyltransferase.	0.612
GACE_0723	GACE_1175	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase.	0.612
GACE_0723	GACE_1413	3-ketoacyl-CoA thiolase.	Glutaryl-CoA dehydrogenase.	0.551
GACE_0723	GACE_1692	3-ketoacyl-CoA thiolase.	Acetyl-CoA C-acyltransferase.	0.610
GACE_0766	GACE_0093	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase.	0.612
GACE_0766	GACE_0723	3-ketoacyl-CoA thiolase.	3-ketoacyl-CoA thiolase.	0.612