15 items (Leishmania major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LMJF_27_0450	Ribosome biogenesis protein. (330 aa)
	LMJF_35_1820	Uncharacterized protein. (273 aa)
	LmjF22.0030	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (671 aa)
	LMJF_36_6920	Uncharacterized protein. (275 aa)
	LMJF_36_4650	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (227 aa)
	LMJF_36_1880	Uncharacterized protein. (634 aa)
	LMJF_33_2400	Putative ras-like small GTPases. (567 aa)
	LMJF_33_1350	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (181 aa)
	LMJF_31_0200	WD_REPEATS_REGION domain-containing protein. (485 aa)
	LMJF_22_1380	Protein MAK16 homolog; Belongs to the MAK16 family. (267 aa)
	LMJF_20_1670	Putative ribosome biogenesis protein. (317 aa)
	LMJF_16_0890	Uncharacterized protein. (662 aa)
	LmjF11.0410	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (808 aa)
	LMJF_10_1030	RNA-binding protein-like protein. (379 aa)
	LMJF_09_0005	Uncharacterized protein. (373 aa)

Your Current Organism:

Leishmania major

NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LMJF_09_0005	LMJF_10_1030	Q4QI35	Q4QHB1	Uncharacterized protein.	RNA-binding protein-like protein.	0.997
LMJF_09_0005	LMJF_16_0890	Q4QI35	Q4QET0	Uncharacterized protein.	Uncharacterized protein.	0.996
LMJF_09_0005	LMJF_20_1670	Q4QI35	Q4QCN5	Uncharacterized protein.	Putative ribosome biogenesis protein.	0.984
LMJF_09_0005	LMJF_22_1380	Q4QI35	Q4QBK9	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.999
LMJF_09_0005	LMJF_27_0450	Q4QI35	E9AD22	Uncharacterized protein.	Ribosome biogenesis protein.	0.999
LMJF_09_0005	LMJF_31_0200	Q4QI35	Q4Q6P4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
LMJF_09_0005	LMJF_33_1350	Q4QI35	Q4Q453	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.956
LMJF_09_0005	LMJF_33_2400	Q4QI35	Q4Q3U7	Uncharacterized protein.	Putative ras-like small GTPases.	0.955
LMJF_09_0005	LMJF_35_1820	Q4QI35	E9AF03	Uncharacterized protein.	Uncharacterized protein.	0.993
LMJF_09_0005	LMJF_36_1880	Q4QI35	Q4Q1N6	Uncharacterized protein.	Uncharacterized protein.	0.963
LMJF_09_0005	LMJF_36_4650	Q4QI35	Q4Q0U9	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.992
LMJF_09_0005	LMJF_36_6920	Q4QI35	Q4Q062	Uncharacterized protein.	Uncharacterized protein.	0.957
LMJF_09_0005	LmjF11.0410	Q4QI35	Q4QH39	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.999
LMJF_09_0005	LmjF22.0030	Q4QI35	O97209	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.998
LMJF_10_1030	LMJF_09_0005	Q4QHB1	Q4QI35	RNA-binding protein-like protein.	Uncharacterized protein.	0.997
LMJF_10_1030	LMJF_16_0890	Q4QHB1	Q4QET0	RNA-binding protein-like protein.	Uncharacterized protein.	0.992
LMJF_10_1030	LMJF_20_1670	Q4QHB1	Q4QCN5	RNA-binding protein-like protein.	Putative ribosome biogenesis protein.	0.999
LMJF_10_1030	LMJF_22_1380	Q4QHB1	Q4QBK9	RNA-binding protein-like protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.986
LMJF_10_1030	LMJF_27_0450	Q4QHB1	E9AD22	RNA-binding protein-like protein.	Ribosome biogenesis protein.	0.999
LMJF_10_1030	LMJF_31_0200	Q4QHB1	Q4Q6P4	RNA-binding protein-like protein.	WD_REPEATS_REGION domain-containing protein.	0.998