(11 nodes) Mitochondrial iron-sulfur cluster biogenesis network (Fusarium venenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2L2SS25	Uncharacterized protein. (241 aa)
	A0A2L2SXC5	Aminotran_5 domain-containing protein. (416 aa)
	A0A2L2SXZ1	Fungal_trans domain-containing protein. (556 aa)
	A0A2L2T549	Zn(2)-C6 fungal-type domain-containing protein. (152 aa)
	A0A2L2T9L8	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins. (192 aa)
	A0A2L2TDP0	Lactamase_B domain-containing protein. (294 aa)
	A0A2L2TEV2	Uncharacterized protein. (205 aa)
	A0A2L2TFZ3	Aminotran_5 domain-containing protein. (502 aa)
	A0A2L2TGB5	Zn(2)-C6 fungal-type domain-containing protein. (877 aa)
	A0A2L2THL2	Uncharacterized protein; Belongs to the complex I LYR family. (113 aa)
	A0A2L2TTA7	2Fe-2S ferredoxin-type domain-containing protein. (189 aa)

Your Current Organism:

Fusarium venenatum

NCBI taxonomy Id: 56646
Other names: CBS 458.93, F. venenatum, Fusarium venetum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2L2SS25	A0A2L2SXC5	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.916
A0A2L2SS25	A0A2L2SXZ1	Uncharacterized protein.	Fungal_trans domain-containing protein.	0.843
A0A2L2SS25	A0A2L2T549	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.843
A0A2L2SS25	A0A2L2T9L8	Uncharacterized protein.	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.976
A0A2L2SS25	A0A2L2TDP0	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.676
A0A2L2SS25	A0A2L2TFZ3	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.916
A0A2L2SS25	A0A2L2TGB5	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.843
A0A2L2SS25	A0A2L2THL2	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.843
A0A2L2SS25	A0A2L2TTA7	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.676
A0A2L2SXC5	A0A2L2SS25	Aminotran_5 domain-containing protein.	Uncharacterized protein.	0.916
A0A2L2SXC5	A0A2L2SXZ1	Aminotran_5 domain-containing protein.	Fungal_trans domain-containing protein.	0.833
A0A2L2SXC5	A0A2L2T549	Aminotran_5 domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.833
A0A2L2SXC5	A0A2L2T9L8	Aminotran_5 domain-containing protein.	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.994
A0A2L2SXC5	A0A2L2TDP0	Aminotran_5 domain-containing protein.	Lactamase_B domain-containing protein.	0.853
A0A2L2SXC5	A0A2L2TEV2	Aminotran_5 domain-containing protein.	Uncharacterized protein.	0.916
A0A2L2SXC5	A0A2L2TGB5	Aminotran_5 domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.833
A0A2L2SXC5	A0A2L2THL2	Aminotran_5 domain-containing protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.833
A0A2L2SXC5	A0A2L2TTA7	Aminotran_5 domain-containing protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.853
A0A2L2SXZ1	A0A2L2SS25	Fungal_trans domain-containing protein.	Uncharacterized protein.	0.843
A0A2L2SXZ1	A0A2L2SXC5	Fungal_trans domain-containing protein.	Aminotran_5 domain-containing protein.	0.833