(20 nodes) Mixed, incl. Myosin complex, and Calcium-mediated signaling network (Fusarium venenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2L2SPZ3	Uncharacterized protein. (284 aa)
	A0A2L2SQI9	Peptidylprolyl isomerase. (145 aa)
	A0A2L2SW15	Uncharacterized protein. (239 aa)
	A0A2L2SZC5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (368 aa)
	A0A2L2T076	Zn(2)-C6 fungal-type domain-containing protein. (499 aa)
	A0A2L2T2S3	Uncharacterized protein. (190 aa)
	A0A2L2T4J8	DJ-1_PfpI domain-containing protein. (226 aa)
	A0A2L2T660	EF-hand domain-containing protein. (2104 aa)
	A0A2L2T6J6	Uncharacterized protein. (161 aa)
	A0A2L2T7K8	Uncharacterized protein; Belongs to the calmodulin family. (149 aa)
	A0A2L2TCE6	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (980 aa)
	A0A2L2TEZ3	Uncharacterized protein. (212 aa)
	A0A2L2TGT6	Uncharacterized protein. (174 aa)
	A0A2L2TL05	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1221 aa)
	A0A2L2TNM0	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2398 aa)
	A0A2L2TTA0	Serine/threonine-protein phosphatase. (566 aa)
	A0A2L2TV38	Protein kinase domain-containing protein. (284 aa)
	A0A2L2TX57	CRIB domain-containing protein. (810 aa)
	A0A2L2TXR1	Uncharacterized protein. (554 aa)
	A0A2L2TYF9	Uncharacterized protein. (142 aa)

Your Current Organism:

Fusarium venenatum

NCBI taxonomy Id: 56646
Other names: CBS 458.93, F. venenatum, Fusarium venetum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2L2SPZ3	A0A2L2SQI9	Uncharacterized protein.	Peptidylprolyl isomerase.	0.616
A0A2L2SPZ3	A0A2L2SW15	Uncharacterized protein.	Uncharacterized protein.	0.902
A0A2L2SPZ3	A0A2L2SZC5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.731
A0A2L2SPZ3	A0A2L2T4J8	Uncharacterized protein.	DJ-1_PfpI domain-containing protein.	0.902
A0A2L2SPZ3	A0A2L2T660	Uncharacterized protein.	EF-hand domain-containing protein.	0.705
A0A2L2SPZ3	A0A2L2T6J6	Uncharacterized protein.	Uncharacterized protein.	0.932
A0A2L2SPZ3	A0A2L2T7K8	Uncharacterized protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.875
A0A2L2SPZ3	A0A2L2TCE6	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.628
A0A2L2SPZ3	A0A2L2TEZ3	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A2L2SPZ3	A0A2L2TGT6	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A2L2SPZ3	A0A2L2TL05	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.632
A0A2L2SPZ3	A0A2L2TNM0	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.997
A0A2L2SPZ3	A0A2L2TTA0	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.827
A0A2L2SPZ3	A0A2L2TV38	Uncharacterized protein.	Protein kinase domain-containing protein.	0.859
A0A2L2SPZ3	A0A2L2TX57	Uncharacterized protein.	CRIB domain-containing protein.	0.786
A0A2L2SPZ3	A0A2L2TXR1	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A2L2SPZ3	A0A2L2TYF9	Uncharacterized protein.	Uncharacterized protein.	0.856
A0A2L2SQI9	A0A2L2SPZ3	Peptidylprolyl isomerase.	Uncharacterized protein.	0.616
A0A2L2SQI9	A0A2L2T076	Peptidylprolyl isomerase.	Zn(2)-C6 fungal-type domain-containing protein.	0.804
A0A2L2SQI9	A0A2L2T2S3	Peptidylprolyl isomerase.	Uncharacterized protein.	0.804