(12 nodes) Mixed, incl. Small GTPase binding, and RasGAP C-terminus network (Fusarium venenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2L2SSM3	ECM11 domain-containing protein. (466 aa)
	A0A2L2SYZ7	Uncharacterized protein. (78 aa)
	A0A2L2T427	Uncharacterized protein. (134 aa)
	A0A2L2T6Z2	Uncharacterized protein. (98 aa)
	A0A2L2T8J6	Uncharacterized protein. (262 aa)
	A0A2L2T9N8	Uncharacterized protein. (332 aa)
	A0A2L2TB23	Uncharacterized protein. (217 aa)
	A0A2L2TJF0	Uncharacterized protein. (971 aa)
	A0A2L2TJL8	DUF1708 domain-containing protein. (1051 aa)
	A0A2L2TLE1	Ras-GAP domain-containing protein. (779 aa)
	A0A2L2TP02	Uncharacterized protein. (854 aa)
	A0A2L2TPD8	Uncharacterized protein. (163 aa)

Your Current Organism:

Fusarium venenatum

NCBI taxonomy Id: 56646
Other names: CBS 458.93, F. venenatum, Fusarium venetum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2L2SSM3	A0A2L2SYZ7	ECM11 domain-containing protein.	Uncharacterized protein.	0.467
A0A2L2SSM3	A0A2L2T6Z2	ECM11 domain-containing protein.	Uncharacterized protein.	0.481
A0A2L2SSM3	A0A2L2T8J6	ECM11 domain-containing protein.	Uncharacterized protein.	0.481
A0A2L2SSM3	A0A2L2T9N8	ECM11 domain-containing protein.	Uncharacterized protein.	0.467
A0A2L2SSM3	A0A2L2TB23	ECM11 domain-containing protein.	Uncharacterized protein.	0.481
A0A2L2SSM3	A0A2L2TJF0	ECM11 domain-containing protein.	Uncharacterized protein.	0.481
A0A2L2SSM3	A0A2L2TJL8	ECM11 domain-containing protein.	DUF1708 domain-containing protein.	0.467
A0A2L2SSM3	A0A2L2TLE1	ECM11 domain-containing protein.	Ras-GAP domain-containing protein.	0.488
A0A2L2SYZ7	A0A2L2SSM3	Uncharacterized protein.	ECM11 domain-containing protein.	0.467
A0A2L2SYZ7	A0A2L2T427	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A2L2SYZ7	A0A2L2T6Z2	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A2L2SYZ7	A0A2L2T8J6	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A2L2SYZ7	A0A2L2TB23	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A2L2SYZ7	A0A2L2TJF0	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A2L2SYZ7	A0A2L2TLE1	Uncharacterized protein.	Ras-GAP domain-containing protein.	0.662
A0A2L2SYZ7	A0A2L2TP02	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A2L2SYZ7	A0A2L2TPD8	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A2L2T427	A0A2L2SYZ7	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A2L2T427	A0A2L2T6Z2	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A2L2T427	A0A2L2T8J6	Uncharacterized protein.	Uncharacterized protein.	0.481