(15 nodes) G1/S DNA Damage Checkpoints, and DNA-binding RFX-type winged-helix domain network (Fusarium venenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2L2SP63	RFX-type winged-helix domain-containing protein. (768 aa)
	A0A2L2SP77	Uncharacterized protein. (304 aa)
	A0A2L2SQJ7	Uncharacterized protein. (671 aa)
	A0A2L2T0U5	FHA domain-containing protein. (243 aa)
	A0A2L2T1S5	Uncharacterized protein. (1198 aa)
	A0A2L2T3B4	Rhodanese domain-containing protein. (562 aa)
	A0A2L2T551	Protein kinase domain-containing protein. (501 aa)
	A0A2L2T8D4	Uncharacterized protein. (307 aa)
	A0A2L2TA26	Uncharacterized protein. (503 aa)
	A0A2L2TBF4	Protein kinase domain-containing protein. (510 aa)
	A0A2L2TLL3	Uncharacterized protein. (1195 aa)
	A0A2L2TN28	Protein kinase domain-containing protein. (770 aa)
	A0A2L2TS58	BRCT domain-containing protein. (1165 aa)
	A0A2L2TW02	Rhodanese domain-containing protein. (146 aa)
	A0A2L2TXW3	MRC1 domain-containing protein. (1290 aa)

Your Current Organism:

Fusarium venenatum

NCBI taxonomy Id: 56646
Other names: CBS 458.93, F. venenatum, Fusarium venetum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2L2SP63	A0A2L2SQJ7	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.963
A0A2L2SP63	A0A2L2T0U5	RFX-type winged-helix domain-containing protein.	FHA domain-containing protein.	0.897
A0A2L2SP63	A0A2L2T1S5	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.818
A0A2L2SP63	A0A2L2TA26	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.818
A0A2L2SP63	A0A2L2TLL3	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.969
A0A2L2SP77	A0A2L2T3B4	Uncharacterized protein.	Rhodanese domain-containing protein.	0.797
A0A2L2SP77	A0A2L2T551	Uncharacterized protein.	Protein kinase domain-containing protein.	0.504
A0A2L2SP77	A0A2L2T8D4	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A2L2SP77	A0A2L2TBF4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.504
A0A2L2SP77	A0A2L2TN28	Uncharacterized protein.	Protein kinase domain-containing protein.	0.504
A0A2L2SP77	A0A2L2TW02	Uncharacterized protein.	Rhodanese domain-containing protein.	0.797
A0A2L2SQJ7	A0A2L2SP63	Uncharacterized protein.	RFX-type winged-helix domain-containing protein.	0.963
A0A2L2SQJ7	A0A2L2T3B4	Uncharacterized protein.	Rhodanese domain-containing protein.	0.904
A0A2L2SQJ7	A0A2L2T551	Uncharacterized protein.	Protein kinase domain-containing protein.	0.730
A0A2L2SQJ7	A0A2L2T8D4	Uncharacterized protein.	Uncharacterized protein.	0.686
A0A2L2SQJ7	A0A2L2TBF4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.974
A0A2L2SQJ7	A0A2L2TLL3	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A2L2SQJ7	A0A2L2TN28	Uncharacterized protein.	Protein kinase domain-containing protein.	0.738
A0A2L2SQJ7	A0A2L2TS58	Uncharacterized protein.	BRCT domain-containing protein.	0.908
A0A2L2SQJ7	A0A2L2TW02	Uncharacterized protein.	Rhodanese domain-containing protein.	0.793