(34 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Fusarium venenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2L2THN9	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (255 aa)
	A0A2L2TGW5	RRM_2 domain-containing protein. (196 aa)
	A0A2L2TGT1	RNase_PH domain-containing protein. (338 aa)
	A0A2L2TF69	Uncharacterized protein. (474 aa)
	A0A2L2TER9	RRM domain-containing protein. (603 aa)
	A0A2L2TEI6	Uncharacterized protein. (203 aa)
	A0A2L2TDX0	EST1_DNA_bind domain-containing protein. (653 aa)
	A0A2L2TDU1	Uncharacterized protein. (482 aa)
	A0A2L2TD57	Uncharacterized protein. (301 aa)
	A0A2L2TD23	Uncharacterized protein. (798 aa)
	A0A2L2TCQ0	Nudix hydrolase domain-containing protein. (827 aa)
	A0A2L2TCJ2	Uncharacterized protein. (404 aa)
	A0A2L2T919	EST1_DNA_bind domain-containing protein. (687 aa)
	A0A2L2T6G3	Uncharacterized protein. (1579 aa)
	A0A2L2T5Y1	RRM domain-containing protein. (670 aa)
	A0A2L2T3R9	Uncharacterized protein. (267 aa)
	A0A2L2T1Y0	AAA_12 domain-containing protein. (1063 aa)
	A0A2L2T1C0	Uncharacterized protein. (1270 aa)
	A0A2L2T1A3	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1406 aa)
	A0A2L2T132	Uncharacterized protein. (158 aa)
	A0A2L2SZQ0	Uncharacterized protein. (61 aa)
	A0A2L2SXS5	Uncharacterized protein; Belongs to the DEAD box helicase family. (478 aa)
	A0A2L2SXD3	RNase_PH domain-containing protein. (267 aa)
	A0A2L2SS17	AAA_12 domain-containing protein. (984 aa)
	A0A2L2SQH7	Uncharacterized protein. (939 aa)
	A0A2L2TKD2	RNase_PH domain-containing protein. (336 aa)
	A0A2L2TLF9	DUF2439 domain-containing protein. (916 aa)
	A0A2L2TMI9	Helicase ATP-binding domain-containing protein. (1083 aa)
	A0A2L2TND1	Uncharacterized protein. (1421 aa)
	A0A2L2TQI6	Uncharacterized protein. (1118 aa)
	A0A2L2TRE3	Uncharacterized protein. (293 aa)
	A0A2L2TU22	RNase_PH domain-containing protein. (250 aa)
	A0A2L2U085	Uncharacterized protein. (382 aa)
	A0A2L2U243	WD_REPEATS_REGION domain-containing protein. (408 aa)

Your Current Organism:

Fusarium venenatum

NCBI taxonomy Id: 56646
Other names: CBS 458.93, F. venenatum, Fusarium venetum

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2L2SQH7	A0A2L2SS17	Uncharacterized protein.	AAA_12 domain-containing protein.	0.897
A0A2L2SQH7	A0A2L2T132	Uncharacterized protein.	Uncharacterized protein.	0.843
A0A2L2SQH7	A0A2L2T1A3	Uncharacterized protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.591
A0A2L2SQH7	A0A2L2T1Y0	Uncharacterized protein.	AAA_12 domain-containing protein.	0.843
A0A2L2SQH7	A0A2L2T5Y1	Uncharacterized protein.	RRM domain-containing protein.	0.969
A0A2L2SQH7	A0A2L2T6G3	Uncharacterized protein.	Uncharacterized protein.	0.843
A0A2L2SQH7	A0A2L2TD23	Uncharacterized protein.	Uncharacterized protein.	0.827
A0A2L2SQH7	A0A2L2TD57	Uncharacterized protein.	Uncharacterized protein.	0.791
A0A2L2SQH7	A0A2L2TEI6	Uncharacterized protein.	Uncharacterized protein.	0.843
A0A2L2SQH7	A0A2L2TF69	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A2L2SQH7	A0A2L2TLF9	Uncharacterized protein.	DUF2439 domain-containing protein.	0.843
A0A2L2SQH7	A0A2L2TMI9	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.897
A0A2L2SQH7	A0A2L2TQI6	Uncharacterized protein.	Uncharacterized protein.	0.761
A0A2L2SS17	A0A2L2SQH7	AAA_12 domain-containing protein.	Uncharacterized protein.	0.897
A0A2L2SS17	A0A2L2SXS5	AAA_12 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.442
A0A2L2SS17	A0A2L2T1A3	AAA_12 domain-containing protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.729
A0A2L2SS17	A0A2L2T3R9	AAA_12 domain-containing protein.	Uncharacterized protein.	0.577
A0A2L2SS17	A0A2L2T5Y1	AAA_12 domain-containing protein.	RRM domain-containing protein.	0.977
A0A2L2SS17	A0A2L2TCQ0	AAA_12 domain-containing protein.	Nudix hydrolase domain-containing protein.	0.676
A0A2L2SS17	A0A2L2TD23	AAA_12 domain-containing protein.	Uncharacterized protein.	0.858