(16 nodes) Vesicle docking network (Fusarium venenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2L2T8D8	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (722 aa)
	A0A2L2T755	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (344 aa)
	A0A2L2T069	Uncharacterized protein. (683 aa)
	A0A2L2SYR2	Uncharacterized protein. (361 aa)
	A0A2L2SXN5	Sec3-PIP2_bind domain-containing protein. (1527 aa)
	A0A2L2SUN2	t-SNARE coiled-coil homology domain-containing protein. (321 aa)
	A0A2L2SQR3	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (1038 aa)
	A0A2L2SNG7	t-SNARE coiled-coil homology domain-containing protein. (236 aa)
	A0A2L2SNG2	Sec8_exocyst domain-containing protein. (1068 aa)
	A0A2L2TXH8	E3 ubiquitin-protein ligase PEP5. (981 aa)
	A0A2L2TVW9	t-SNARE coiled-coil homology domain-containing protein. (263 aa)
	A0A2L2TVS9	CASP_C domain-containing protein. (722 aa)
	A0A2L2TNM2	Uncharacterized protein. (1074 aa)
	A0A2L2TJ96	t-SNARE coiled-coil homology domain-containing protein. (260 aa)
	A0A2L2TFD7	Pep3_Vps18 domain-containing protein. (964 aa)
	A0A2L2TAA5	t-SNARE coiled-coil homology domain-containing protein. (319 aa)

Your Current Organism:

Fusarium venenatum

NCBI taxonomy Id: 56646
Other names: CBS 458.93, F. venenatum, Fusarium venetum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2L2SNG2	A0A2L2SQR3	Sec8_exocyst domain-containing protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.998
A0A2L2SNG2	A0A2L2SXN5	Sec8_exocyst domain-containing protein.	Sec3-PIP2_bind domain-containing protein.	0.998
A0A2L2SNG2	A0A2L2T8D8	Sec8_exocyst domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.787
A0A2L2SNG2	A0A2L2TAA5	Sec8_exocyst domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.487
A0A2L2SNG7	A0A2L2SUN2	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.978
A0A2L2SNG7	A0A2L2SYR2	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.614
A0A2L2SNG7	A0A2L2T069	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.483
A0A2L2SNG7	A0A2L2T755	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.989
A0A2L2SNG7	A0A2L2T8D8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.428
A0A2L2SNG7	A0A2L2TAA5	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.704
A0A2L2SNG7	A0A2L2TFD7	t-SNARE coiled-coil homology domain-containing protein.	Pep3_Vps18 domain-containing protein.	0.898
A0A2L2SNG7	A0A2L2TJ96	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.978
A0A2L2SNG7	A0A2L2TVW9	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.757
A0A2L2SNG7	A0A2L2TXH8	t-SNARE coiled-coil homology domain-containing protein.	E3 ubiquitin-protein ligase PEP5.	0.863
A0A2L2SQR3	A0A2L2SNG2	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Sec8_exocyst domain-containing protein.	0.998
A0A2L2SQR3	A0A2L2SXN5	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Sec3-PIP2_bind domain-containing protein.	0.998
A0A2L2SQR3	A0A2L2T8D8	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.738
A0A2L2SUN2	A0A2L2SNG7	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.978
A0A2L2SUN2	A0A2L2T755	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.636
A0A2L2SUN2	A0A2L2T8D8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.561