(17 nodes) Proton-transporting two-sector ATPase complex, catalytic domain network (Fusarium venenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2L2U0B3	Uncharacterized protein. (636 aa)
	A0A2L2T0D1	Uncharacterized protein. (226 aa)
	A0A2L2T0D5	Uncharacterized protein. (311 aa)
	A0A2L2T0D9	Uncharacterized protein. (72 aa)
	A0A2L2T0Q8	Uncharacterized protein. (219 aa)
	A0A2L2T1H3	ATP synthase subunit gamma. (301 aa)
	A0A2L2T2N1	V-ATPase_H_C domain-containing protein. (564 aa)
	A0A2L2T4A3	ATP-synt_DE_N domain-containing protein. (161 aa)
	A0A2L2T5D6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (552 aa)
	A0A2L2T6Z3	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (114 aa)
	A0A2L2T8U4	Uncharacterized protein. (474 aa)
	A0A2L2TAD4	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family. (440 aa)
	A0A2L2TC31	Uncharacterized protein. (810 aa)
	A0A2L2TIV0	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (585 aa)
	A0A2L2TKT7	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (398 aa)
	A0A2L2TN94	Uncharacterized protein. (229 aa)
	A0A2L2TSP7	Aamy domain-containing protein. (707 aa)

Your Current Organism:

Fusarium venenatum

NCBI taxonomy Id: 56646
Other names: CBS 458.93, F. venenatum, Fusarium venetum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2L2T0D1	A0A2L2T0D5	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A2L2T0D1	A0A2L2T0D9	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A2L2T0D1	A0A2L2T0Q8	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A2L2T0D1	A0A2L2T1H3	Uncharacterized protein.	ATP synthase subunit gamma.	0.999
A0A2L2T0D1	A0A2L2T4A3	Uncharacterized protein.	ATP-synt_DE_N domain-containing protein.	0.999
A0A2L2T0D1	A0A2L2T5D6	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
A0A2L2T0D1	A0A2L2T8U4	Uncharacterized protein.	Uncharacterized protein.	0.964
A0A2L2T0D1	A0A2L2TC31	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A2L2T0D1	A0A2L2TIV0	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
A0A2L2T0D1	A0A2L2TN94	Uncharacterized protein.	Uncharacterized protein.	0.690
A0A2L2T0D5	A0A2L2T0D1	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A2L2T0D5	A0A2L2T1H3	Uncharacterized protein.	ATP synthase subunit gamma.	0.977
A0A2L2T0D5	A0A2L2T4A3	Uncharacterized protein.	ATP-synt_DE_N domain-containing protein.	0.983
A0A2L2T0D5	A0A2L2T5D6	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.983
A0A2L2T0D5	A0A2L2TIV0	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.975
A0A2L2T0D9	A0A2L2T0D1	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A2L2T0D9	A0A2L2T1H3	Uncharacterized protein.	ATP synthase subunit gamma.	0.996
A0A2L2T0D9	A0A2L2T4A3	Uncharacterized protein.	ATP-synt_DE_N domain-containing protein.	0.990
A0A2L2T0D9	A0A2L2T5D6	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.995
A0A2L2T0D9	A0A2L2TIV0	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.993