(24 nodes) Translesion synthesis by POLK network (Fusarium venenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2L2SNV2	Uncharacterized protein. (151 aa)
	A0A2L2SP46	Uncharacterized protein. (248 aa)
	A0A2L2SRG8	Zds_C domain-containing protein. (964 aa)
	A0A2L2STS1	CIA30 domain-containing protein. (219 aa)
	A0A2L2SU95	Uncharacterized protein. (146 aa)
	A0A2L2SXG1	Uncharacterized protein. (545 aa)
	A0A2L2T3A3	UmuC domain-containing protein. (639 aa)
	A0A2L2T4Q5	Zn(2)-C6 fungal-type domain-containing protein. (567 aa)
	A0A2L2T588	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1141 aa)
	A0A2L2T5W5	BZIP domain-containing protein. (277 aa)
	A0A2L2T763	ATPase_AAA_core domain-containing protein. (1155 aa)
	A0A2L2TAL3	Uncharacterized protein. (521 aa)
	A0A2L2TD26	Reverse transcriptase Ty1/copia-type domain-containing protein. (226 aa)
	A0A2L2TDF1	Uncharacterized protein. (184 aa)
	A0A2L2TEU2	Amino_oxidase domain-containing protein. (516 aa)
	A0A2L2TKS5	Uncharacterized protein. (1272 aa)
	A0A2L2TL36	Uncharacterized protein. (382 aa)
	A0A2L2TQL0	Uncharacterized protein. (147 aa)
	A0A2L2TQP8	Retrotrans_gag domain-containing protein. (390 aa)
	A0A2L2TWD2	Ubiquitin-like domain-containing protein. (153 aa)
	A0A2L2TXM6	Uncharacterized protein. (175 aa)
	A0A2L2TY76	BRCT domain-containing protein. (267 aa)
	A0A2L2U049	BZIP domain-containing protein. (246 aa)
	A0A2L2U063	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (607 aa)

Your Current Organism:

Fusarium venenatum

NCBI taxonomy Id: 56646
Other names: CBS 458.93, F. venenatum, Fusarium venetum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2L2SNV2	A0A2L2U063	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.766
A0A2L2SP46	A0A2L2U063	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.766
A0A2L2SRG8	A0A2L2U063	Zds_C domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.766
A0A2L2STS1	A0A2L2SXG1	CIA30 domain-containing protein.	Uncharacterized protein.	0.695
A0A2L2STS1	A0A2L2T3A3	CIA30 domain-containing protein.	UmuC domain-containing protein.	0.725
A0A2L2STS1	A0A2L2T4Q5	CIA30 domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.695
A0A2L2STS1	A0A2L2T588	CIA30 domain-containing protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.695
A0A2L2STS1	A0A2L2T763	CIA30 domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.591
A0A2L2STS1	A0A2L2TXM6	CIA30 domain-containing protein.	Uncharacterized protein.	0.695
A0A2L2STS1	A0A2L2TY76	CIA30 domain-containing protein.	BRCT domain-containing protein.	0.695
A0A2L2STS1	A0A2L2U063	CIA30 domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.602
A0A2L2SU95	A0A2L2U063	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.766
A0A2L2SXG1	A0A2L2STS1	Uncharacterized protein.	CIA30 domain-containing protein.	0.695
A0A2L2SXG1	A0A2L2T3A3	Uncharacterized protein.	UmuC domain-containing protein.	0.886
A0A2L2SXG1	A0A2L2T5W5	Uncharacterized protein.	BZIP domain-containing protein.	0.695
A0A2L2SXG1	A0A2L2T763	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.590
A0A2L2SXG1	A0A2L2TQL0	Uncharacterized protein.	Uncharacterized protein.	0.695
A0A2L2SXG1	A0A2L2TWD2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.695
A0A2L2SXG1	A0A2L2U049	Uncharacterized protein.	BZIP domain-containing protein.	0.695
A0A2L2SXG1	A0A2L2U063	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.613