20 items (Leishmania infantum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LINJ_02_0110	Uncharacterized protein. (239 aa)
	LINJ_05_0890	Uncharacterized protein. (1983 aa)
	LINJ_16_1690	Putative U1 small nuclear ribonucleoprotein. (375 aa)
	LINJ_22_0880	Putative small nuclear ribonucleoprotein. (103 aa)
	LINJ_27_1890	Putative small nuclear ribonucleoprotein protein. (111 aa)
	LINJ_28_2780	Putative splicing factor 3B subunit 1. (1026 aa)
	LINJ_29_0910	Uncharacterized protein. (114 aa)
	LINJ_30_0560	Nuclear cap-binding protein subunit 2. (188 aa)
	LINJ_30_0590	Putative spliceosome-associated protein. (474 aa)
	LINJ_30_1270	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
	LINJ_32_1130	Putative small nuclear ribonucleoprotein. (81 aa)
	LINJ_32_2630	Uncharacterized protein. (1290 aa)
	LINJ_33_2250	Uncharacterized protein. (920 aa)
	LINJ_33_3340	Small nuclear ribonucleoprotein Sm D2. (103 aa)
	LINJ_34_3670	Small nuclear ribonucleoprotein Sm D3. (113 aa)
	LINJ_35_4150	Uncharacterized protein. (84 aa)
	LINJ_35_4530	Putative sm-f snRNP core complex protein. (76 aa)
	LINJ_36_0570	Putative small nuclear ribonucleaoprotein. (141 aa)
	LINJ_36_3070	Uncharacterized protein. (113 aa)
	LINJ_36_3190	Putative pre-mRNA branch site protein p14. (182 aa)

Your Current Organism:

Leishmania infantum

NCBI taxonomy Id: 5671
Other names: L. infantum, Leishmania (Leishmania) infantum, Leishmania donovani infantum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LINJ_02_0110	LINJ_05_0890	A4HRL6	A4HSL1	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_02_0110	LINJ_16_1690	A4HRL6	A4HX57	Uncharacterized protein.	Putative U1 small nuclear ribonucleoprotein.	0.967
LINJ_02_0110	LINJ_22_0880	A4HRL6	A4HZX8	Uncharacterized protein.	Putative small nuclear ribonucleoprotein.	0.992
LINJ_02_0110	LINJ_27_1890	A4HRL6	A4I304	Uncharacterized protein.	Putative small nuclear ribonucleoprotein protein.	0.999
LINJ_02_0110	LINJ_28_2780	A4HRL6	A4I3Z1	Uncharacterized protein.	Putative splicing factor 3B subunit 1.	0.999
LINJ_02_0110	LINJ_29_0910	A4HRL6	A4I4E0	Uncharacterized protein.	Uncharacterized protein.	0.993
LINJ_02_0110	LINJ_30_0560	A4HRL6	A4I582	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.989
LINJ_02_0110	LINJ_30_0590	A4HRL6	A4I585	Uncharacterized protein.	Putative spliceosome-associated protein.	0.999
LINJ_02_0110	LINJ_30_1270	A4HRL6	A4I5F2	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
LINJ_02_0110	LINJ_32_1130	A4HRL6	A4I7S4	Uncharacterized protein.	Putative small nuclear ribonucleoprotein.	0.998
LINJ_02_0110	LINJ_32_2630	A4HRL6	A4I870	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_02_0110	LINJ_33_2250	A4HRL6	A4I984	Uncharacterized protein.	Uncharacterized protein.	0.977
LINJ_02_0110	LINJ_33_3340	A4HRL6	A4I9G0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.997
LINJ_02_0110	LINJ_34_3670	A4HRL6	A4IAF5	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.958
LINJ_02_0110	LINJ_35_4150	A4HRL6	A4IBU8	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_02_0110	LINJ_35_4530	A4HRL6	A4IBY6	Uncharacterized protein.	Putative sm-f snRNP core complex protein.	0.994
LINJ_02_0110	LINJ_36_0570	A4HRL6	A4ICT3	Uncharacterized protein.	Putative small nuclear ribonucleaoprotein.	0.958
LINJ_02_0110	LINJ_36_3070	A4HRL6	A4ID80	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_02_0110	LINJ_36_3190	A4HRL6	A4ID92	Uncharacterized protein.	Putative pre-mRNA branch site protein p14.	0.999
LINJ_05_0890	LINJ_02_0110	A4HSL1	A4HRL6	Uncharacterized protein.	Uncharacterized protein.	0.999