11 items (Leishmania infantum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LINJ_01_0190	Uncharacterized protein. (207 aa)
	LINJ_07_0020	Uncharacterized protein. (293 aa)
	LINJ_09_0410	Uncharacterized protein. (272 aa)
	LINJ_15_1090	Uncharacterized protein. (427 aa)
	LINJ_24_1120	Putative pre-mRNA splicing factor. (1086 aa)
	LINJ_27_2430	Uncharacterized protein. (513 aa)
	LINJ_29_1310	Uncharacterized protein. (477 aa)
	LINJ_36_5050	Uncharacterized protein. (509 aa)
	LINJ_36_5390	Uncharacterized protein. (565 aa)
	LINJ_36_4490	Uncharacterized protein. (824 aa)
	LINJ_23_1950	Uncharacterized protein. (794 aa)

Your Current Organism:

Leishmania infantum

NCBI taxonomy Id: 5671
Other names: L. infantum, Leishmania (Leishmania) infantum, Leishmania donovani infantum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LINJ_01_0190	LINJ_07_0020	A4HRE0	A4HT23	Uncharacterized protein.	Uncharacterized protein.	0.988
LINJ_01_0190	LINJ_09_0410	A4HRE0	A4HTX3	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_01_0190	LINJ_15_1090	A4HRE0	A4HWK1	Uncharacterized protein.	Uncharacterized protein.	0.982
LINJ_01_0190	LINJ_23_1950	A4HRE0	E9AH17	Uncharacterized protein.	Uncharacterized protein.	0.956
LINJ_01_0190	LINJ_24_1120	A4HRE0	A4I0U7	Uncharacterized protein.	Putative pre-mRNA splicing factor.	0.996
LINJ_01_0190	LINJ_27_2430	A4HRE0	A4I350	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_01_0190	LINJ_29_1310	A4HRE0	A4I4H9	Uncharacterized protein.	Uncharacterized protein.	0.984
LINJ_01_0190	LINJ_36_4490	A4HRE0	A4IE46	Uncharacterized protein.	Uncharacterized protein.	0.979
LINJ_01_0190	LINJ_36_5050	A4HRE0	A4IDR0	Uncharacterized protein.	Uncharacterized protein.	0.986
LINJ_01_0190	LINJ_36_5390	A4HRE0	A4IDT8	Uncharacterized protein.	Uncharacterized protein.	0.996
LINJ_07_0020	LINJ_01_0190	A4HT23	A4HRE0	Uncharacterized protein.	Uncharacterized protein.	0.988
LINJ_07_0020	LINJ_09_0410	A4HT23	A4HTX3	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_07_0020	LINJ_15_1090	A4HT23	A4HWK1	Uncharacterized protein.	Uncharacterized protein.	0.998
LINJ_07_0020	LINJ_23_1950	A4HT23	E9AH17	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_07_0020	LINJ_24_1120	A4HT23	A4I0U7	Uncharacterized protein.	Putative pre-mRNA splicing factor.	0.992
LINJ_07_0020	LINJ_27_2430	A4HT23	A4I350	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_07_0020	LINJ_29_1310	A4HT23	A4I4H9	Uncharacterized protein.	Uncharacterized protein.	0.993
LINJ_07_0020	LINJ_36_4490	A4HT23	A4IE46	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_07_0020	LINJ_36_5050	A4HT23	A4IDR0	Uncharacterized protein.	Uncharacterized protein.	0.999
LINJ_07_0020	LINJ_36_5390	A4HT23	A4IDT8	Uncharacterized protein.	Uncharacterized protein.	0.972