(5 nodes) Double-strand break repair via nonhomologous end joining network (Leishmania infantum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LINJ_13_1540	Uncharacterized protein. (772 aa)
	LINJ_26_1320	Putative DNA ligase k alpha. (630 aa)
	LINJ_26_1330	Putative DNA ligase. (433 aa)
	LINJ_29_1140	Putative KU70 protein. (967 aa)
	LINJ_30_0340	Putative KU80 protein. (798 aa)

Your Current Organism:

Leishmania infantum

NCBI taxonomy Id: 5671
Other names: L. infantum, Leishmania (Leishmania) infantum, Leishmania donovani infantum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LINJ_13_1540	LINJ_26_1320	A4HVS7	A4I263	Uncharacterized protein.	Putative DNA ligase k alpha.	0.601
LINJ_13_1540	LINJ_26_1330	A4HVS7	A4I264	Uncharacterized protein.	Putative DNA ligase.	0.601
LINJ_13_1540	LINJ_29_1140	A4HVS7	A4I4G4	Uncharacterized protein.	Putative KU70 protein.	0.805
LINJ_13_1540	LINJ_30_0340	A4HVS7	A4I561	Uncharacterized protein.	Putative KU80 protein.	0.867
LINJ_26_1320	LINJ_13_1540	A4I263	A4HVS7	Putative DNA ligase k alpha.	Uncharacterized protein.	0.601
LINJ_26_1320	LINJ_26_1330	A4I263	A4I264	Putative DNA ligase k alpha.	Putative DNA ligase.	0.900
LINJ_26_1320	LINJ_29_1140	A4I263	A4I4G4	Putative DNA ligase k alpha.	Putative KU70 protein.	0.927
LINJ_26_1320	LINJ_30_0340	A4I263	A4I561	Putative DNA ligase k alpha.	Putative KU80 protein.	0.936
LINJ_26_1330	LINJ_13_1540	A4I264	A4HVS7	Putative DNA ligase.	Uncharacterized protein.	0.601
LINJ_26_1330	LINJ_26_1320	A4I264	A4I263	Putative DNA ligase.	Putative DNA ligase k alpha.	0.900
LINJ_26_1330	LINJ_29_1140	A4I264	A4I4G4	Putative DNA ligase.	Putative KU70 protein.	0.927
LINJ_26_1330	LINJ_30_0340	A4I264	A4I561	Putative DNA ligase.	Putative KU80 protein.	0.936
LINJ_29_1140	LINJ_13_1540	A4I4G4	A4HVS7	Putative KU70 protein.	Uncharacterized protein.	0.805
LINJ_29_1140	LINJ_26_1320	A4I4G4	A4I263	Putative KU70 protein.	Putative DNA ligase k alpha.	0.927
LINJ_29_1140	LINJ_26_1330	A4I4G4	A4I264	Putative KU70 protein.	Putative DNA ligase.	0.927
LINJ_29_1140	LINJ_30_0340	A4I4G4	A4I561	Putative KU70 protein.	Putative KU80 protein.	0.999
LINJ_30_0340	LINJ_13_1540	A4I561	A4HVS7	Putative KU80 protein.	Uncharacterized protein.	0.867
LINJ_30_0340	LINJ_26_1320	A4I561	A4I263	Putative KU80 protein.	Putative DNA ligase k alpha.	0.936
LINJ_30_0340	LINJ_26_1330	A4I561	A4I264	Putative KU80 protein.	Putative DNA ligase.	0.936
LINJ_30_0340	LINJ_29_1140	A4I561	A4I4G4	Putative KU80 protein.	Putative KU70 protein.	0.999