5 items (Leishmania infantum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LINJ_32_1130	Putative small nuclear ribonucleoprotein. (81 aa)
	LINJ_36_0570	Putative small nuclear ribonucleaoprotein. (141 aa)
	LINJ_27_1140	Uncharacterized protein. (321 aa)
	LINJ_22_0880	Putative small nuclear ribonucleoprotein. (103 aa)
	LINJ_36_1350	Uncharacterized protein. (608 aa)

Your Current Organism:

Leishmania infantum

NCBI taxonomy Id: 5671
Other names: L. infantum, Leishmania (Leishmania) infantum, Leishmania donovani infantum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LINJ_22_0880	LINJ_32_1130	A4HZX8	A4I7S4	Putative small nuclear ribonucleoprotein.	Putative small nuclear ribonucleoprotein.	0.999
LINJ_22_0880	LINJ_36_0570	A4HZX8	A4ICT3	Putative small nuclear ribonucleoprotein.	Putative small nuclear ribonucleaoprotein.	0.999
LINJ_32_1130	LINJ_22_0880	A4I7S4	A4HZX8	Putative small nuclear ribonucleoprotein.	Putative small nuclear ribonucleoprotein.	0.999
LINJ_32_1130	LINJ_36_0570	A4I7S4	A4ICT3	Putative small nuclear ribonucleoprotein.	Putative small nuclear ribonucleaoprotein.	0.999
LINJ_36_0570	LINJ_22_0880	A4ICT3	A4HZX8	Putative small nuclear ribonucleaoprotein.	Putative small nuclear ribonucleoprotein.	0.999
LINJ_36_0570	LINJ_32_1130	A4ICT3	A4I7S4	Putative small nuclear ribonucleaoprotein.	Putative small nuclear ribonucleoprotein.	0.999