(10 nodes) snRNP Sm proteins network (Leishmania infantum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LINJ_30_1270	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (197 aa)
	LINJ_32_1130	Putative small nuclear ribonucleoprotein. (81 aa)
	LINJ_33_3340	Small nuclear ribonucleoprotein Sm D2. (103 aa)
	LINJ_34_3670	Small nuclear ribonucleoprotein Sm D3. (113 aa)
	LINJ_22_0880	Putative small nuclear ribonucleoprotein. (103 aa)
	LINJ_25_1780	Uncharacterized protein. (131 aa)
	LINJ_26_0010	Putative Lsm7p protein. (91 aa)
	LINJ_27_1890	Putative small nuclear ribonucleoprotein protein. (111 aa)
	LINJ_35_4530	Putative sm-f snRNP core complex protein. (76 aa)

Your Current Organism:

Leishmania infantum

NCBI taxonomy Id: 5671
Other names: L. infantum, Leishmania (Leishmania) infantum, Leishmania donovani infantum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LINJ_22_0880	LINJ_25_1780	A4HZX8	A4I1L8	Putative small nuclear ribonucleoprotein.	Uncharacterized protein.	0.994
LINJ_22_0880	LINJ_26_0010	A4HZX8	A4I1T9	Putative small nuclear ribonucleoprotein.	Putative Lsm7p protein.	0.989
LINJ_22_0880	LINJ_27_1890	A4HZX8	A4I304	Putative small nuclear ribonucleoprotein.	Putative small nuclear ribonucleoprotein protein.	0.999
LINJ_22_0880	LINJ_30_1270	A4HZX8	A4I5F2	Putative small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
LINJ_22_0880	LINJ_32_1130	A4HZX8	A4I7S4	Putative small nuclear ribonucleoprotein.	Putative small nuclear ribonucleoprotein.	0.999
LINJ_22_0880	LINJ_33_3340	A4HZX8	A4I9G0	Putative small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein Sm D2.	0.999
LINJ_22_0880	LINJ_34_3670	A4HZX8	A4IAF5	Putative small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein Sm D3.	0.999
LINJ_22_0880	LINJ_35_4530	A4HZX8	A4IBY6	Putative small nuclear ribonucleoprotein.	Putative sm-f snRNP core complex protein.	0.999
LINJ_22_0880	LSM4	A4HZX8	A4I7N8	Putative small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
LINJ_25_1780	LINJ_22_0880	A4I1L8	A4HZX8	Uncharacterized protein.	Putative small nuclear ribonucleoprotein.	0.994
LINJ_25_1780	LINJ_26_0010	A4I1L8	A4I1T9	Uncharacterized protein.	Putative Lsm7p protein.	0.999
LINJ_25_1780	LINJ_27_1890	A4I1L8	A4I304	Uncharacterized protein.	Putative small nuclear ribonucleoprotein protein.	0.994
LINJ_25_1780	LINJ_30_1270	A4I1L8	A4I5F2	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.992
LINJ_25_1780	LINJ_32_1130	A4I1L8	A4I7S4	Uncharacterized protein.	Putative small nuclear ribonucleoprotein.	0.991
LINJ_25_1780	LINJ_33_3340	A4I1L8	A4I9G0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.997
LINJ_25_1780	LINJ_34_3670	A4I1L8	A4IAF5	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.968
LINJ_25_1780	LINJ_35_4530	A4I1L8	A4IBY6	Uncharacterized protein.	Putative sm-f snRNP core complex protein.	0.995
LINJ_25_1780	LSM4	A4I1L8	A4I7N8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LINJ_26_0010	LINJ_22_0880	A4I1T9	A4HZX8	Putative Lsm7p protein.	Putative small nuclear ribonucleoprotein.	0.989
LINJ_26_0010	LINJ_25_1780	A4I1T9	A4I1L8	Putative Lsm7p protein.	Uncharacterized protein.	0.999