7 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	txnl4a	Thioredoxin like 4A. (194 aa)
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	ddx23	DEAD-box helicase 23. (798 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	snrnp40	Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)
	prpf6	pre-mRNA processing factor 6. (1018 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ddx23	eftud2	ENSCGOP00000018564	ENSCGOP00000049983	DEAD-box helicase 23.	Elongation factor Tu GTP binding domain containing 2.	0.999
ddx23	prpf6	ENSCGOP00000018564	ENSCGOP00000044380	DEAD-box helicase 23.	pre-mRNA processing factor 6.	0.999
ddx23	prpf8	ENSCGOP00000018564	ENSCGOP00000016018	DEAD-box helicase 23.	pre-mRNA processing factor 8.	0.999
ddx23	snrnp200	ENSCGOP00000018564	ENSCGOP00000038205	DEAD-box helicase 23.	Small nuclear ribonucleoprotein U5 subunit 200.	0.992
ddx23	snrnp40	ENSCGOP00000018564	ENSCGOP00000038247	DEAD-box helicase 23.	Small nuclear ribonucleoprotein U5 subunit 40.	0.999
ddx23	txnl4a	ENSCGOP00000018564	ENSCGOP00000005690	DEAD-box helicase 23.	Thioredoxin like 4A.	0.998
eftud2	ddx23	ENSCGOP00000049983	ENSCGOP00000018564	Elongation factor Tu GTP binding domain containing 2.	DEAD-box helicase 23.	0.999
eftud2	prpf6	ENSCGOP00000049983	ENSCGOP00000044380	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 6.	0.999
eftud2	prpf8	ENSCGOP00000049983	ENSCGOP00000016018	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 8.	0.999
eftud2	snrnp200	ENSCGOP00000049983	ENSCGOP00000038205	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein U5 subunit 200.	0.999
eftud2	snrnp40	ENSCGOP00000049983	ENSCGOP00000038247	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein U5 subunit 40.	0.999
eftud2	txnl4a	ENSCGOP00000049983	ENSCGOP00000005690	Elongation factor Tu GTP binding domain containing 2.	Thioredoxin like 4A.	0.998
prpf6	ddx23	ENSCGOP00000044380	ENSCGOP00000018564	pre-mRNA processing factor 6.	DEAD-box helicase 23.	0.999
prpf6	eftud2	ENSCGOP00000044380	ENSCGOP00000049983	pre-mRNA processing factor 6.	Elongation factor Tu GTP binding domain containing 2.	0.999
prpf6	prpf8	ENSCGOP00000044380	ENSCGOP00000016018	pre-mRNA processing factor 6.	pre-mRNA processing factor 8.	0.999
prpf6	snrnp200	ENSCGOP00000044380	ENSCGOP00000038205	pre-mRNA processing factor 6.	Small nuclear ribonucleoprotein U5 subunit 200.	0.999
prpf6	snrnp40	ENSCGOP00000044380	ENSCGOP00000038247	pre-mRNA processing factor 6.	Small nuclear ribonucleoprotein U5 subunit 40.	0.999
prpf6	txnl4a	ENSCGOP00000044380	ENSCGOP00000005690	pre-mRNA processing factor 6.	Thioredoxin like 4A.	0.999
prpf8	ddx23	ENSCGOP00000016018	ENSCGOP00000018564	pre-mRNA processing factor 8.	DEAD-box helicase 23.	0.999
prpf8	eftud2	ENSCGOP00000016018	ENSCGOP00000049983	pre-mRNA processing factor 8.	Elongation factor Tu GTP binding domain containing 2.	0.999