(74 nodes) Spliceosomal complex, and Protein peptidyl-prolyl isomerization network (Cottoperca gobio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DDX41	DEAD-box helicase 41. (620 aa)
	dhx40	DEAH-box helicase 40. (763 aa)
	dhx16	DEAH-box helicase 16. (1055 aa)
	LOC115006517	Peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like. (1202 aa)
	fam32a	Family with sequence similarity 32 member A. (112 aa)
	slu7	SLU7 homolog, splicing factor. (600 aa)
	scnm1	Sodium channel modifier 1. (263 aa)
	LOC115014475	pre-mRNA-processing factor 19-like. (494 aa)
	ppil3	Peptidylprolyl isomerase like 3. (161 aa)
	cwf19l2	CWF19 like cell cycle control factor 2. (1024 aa)
	ppil4	Peptidylprolyl isomerase like 4. (454 aa)
	ENSCGOP00000010844	annotation not available (577 aa)
	bud31	BUD31 homolog. (144 aa)
	ppil6	Peptidylprolyl isomerase like 6. (319 aa)
	nsrp1	Nuclear speckle splicing regulatory protein 1. (479 aa)
	rbm22	RNA binding motif protein 22. (361 aa)
	c6hxorf56	Chromosome 6 CXorf56 homolog. (225 aa)
	cript	CXXC repeat containing interactor of PDZ3 domain. (101 aa)
	mtrex	Mtr4 exosome RNA helicase. (1036 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	dhx29	DExH-box helicase 29. (1281 aa)
	ENSCGOP00000021419	annotation not available (657 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (402 aa)
	dhx34	DExH-box helicase 34. (1147 aa)
	gpkow	G-patch domain and KOW motifs. (526 aa)
	LOC115023589	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like. (730 aa)
	LOC115028506	Nucleolar RNA helicase 2-like. (749 aa)
	ppie	Peptidylprolyl isomerase E. (307 aa)
	rbm48	RNA binding motif protein 48. (360 aa)
	ENSCGOP00000027269	annotation not available (65 aa)
	xab2	XPA binding protein 2. (829 aa)
	LOC115016452	ATP-dependent RNA helicase DQX1-like. (816 aa)
	ppil1	Peptidylprolyl isomerase like 1. (166 aa)
	snw1	SNW domain containing 1. (588 aa)
	SNIP1	Smad nuclear interacting protein 1. (382 aa)
	prpf18	pre-mRNA processing factor 18. (350 aa)
	tfip11	Tuftelin interacting protein 11. (831 aa)
	cdc40	Cell division cycle 40. (645 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (490 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat containing 1. (628 aa)
	LOC115011921	Serine/arginine repetitive matrix protein 2-like. (1244 aa)
	ENSCGOP00000035501	annotation not available (157 aa)
	ENSCGOP00000035502	annotation not available (166 aa)
	prkrip1	PRKR interacting protein 1. (189 aa)
	ENSCGOP00000036193	annotation not available (185 aa)
	LOC115022031	Cactin-like. (794 aa)
	WDR70	WD repeat domain 70. (650 aa)
	zcchc17	Zinc finger CCHC-type containing 17. (257 aa)
	ENSCGOP00000038432	annotation not available (366 aa)
	LOC115006340	GC-rich sequence DNA-binding factor 2-like. (863 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (838 aa)
	syf2	SYF2 pre-mRNA splicing factor. (233 aa)
	WDR25	WD repeat domain 25. (514 aa)
	ZNF830	Zinc finger protein 830. (338 aa)
	bud13	BUD13 homolog. (384 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (261 aa)
	dhx33	DEAH-box helicase 33. (681 aa)
	plrg1	Pleiotropic regulator 1. (512 aa)
	armc7	Armadillo repeat containing 7. (194 aa)
	dhx35	DEAH-box helicase 35. (700 aa)
	LOC115025076	ATP-dependent RNA helicase DHX8. (1213 aa)
	dhx38	DEAH-box helicase 38. (1249 aa)
	ctnnbl1	Catenin beta like 1. (578 aa)
	PPIG	Peptidylprolyl isomerase G. (703 aa)
	rnf113a	Ring finger protein 113A. (324 aa)
	ccdc12	Coiled-coil domain containing 12. (176 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	DDX5	DEAD-box helicase 5. (638 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)
	LOC115027479	SH2 domain-containing adapter protein F-like. (407 aa)
	srrt	Serrate, RNA effector molecule. (899 aa)
	ENSCGOP00000056318	annotation not available (594 aa)
	ppil2	Peptidylprolyl isomerase like 2. (525 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1495 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	DDX5	ENSCGOP00000002779	ENSCGOP00000055116	DEAD-box helicase 41.	DEAD-box helicase 5.	0.674
DDX41	ENSCGOP00000035501	ENSCGOP00000002779	ENSCGOP00000035501	DEAD-box helicase 41.	annotation not available	0.877
DDX41	ENSCGOP00000035502	ENSCGOP00000002779	ENSCGOP00000035502	DEAD-box helicase 41.	annotation not available	0.877
DDX41	ENSCGOP00000036193	ENSCGOP00000002779	ENSCGOP00000036193	DEAD-box helicase 41.	annotation not available	0.481
DDX41	ENSCGOP00000038432	ENSCGOP00000002779	ENSCGOP00000038432	DEAD-box helicase 41.	annotation not available	0.481
DDX41	LOC115006340	ENSCGOP00000002779	ENSCGOP00000038944	DEAD-box helicase 41.	GC-rich sequence DNA-binding factor 2-like.	0.651
DDX41	LOC115016452	ENSCGOP00000002779	ENSCGOP00000030375	DEAD-box helicase 41.	ATP-dependent RNA helicase DQX1-like.	0.634
DDX41	LOC115023589	ENSCGOP00000002779	ENSCGOP00000025930	DEAD-box helicase 41.	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like.	0.669
DDX41	LOC115025076	ENSCGOP00000002779	ENSCGOP00000050243	DEAD-box helicase 41.	ATP-dependent RNA helicase DHX8.	0.781
DDX41	LOC115028506	ENSCGOP00000002779	ENSCGOP00000026339	DEAD-box helicase 41.	Nucleolar RNA helicase 2-like.	0.666
DDX41	PPIG	ENSCGOP00000002779	ENSCGOP00000052152	DEAD-box helicase 41.	Peptidylprolyl isomerase G.	0.481
DDX41	WDR25	ENSCGOP00000002779	ENSCGOP00000039326	DEAD-box helicase 41.	WD repeat domain 25.	0.717
DDX41	ccdc12	ENSCGOP00000002779	ENSCGOP00000053678	DEAD-box helicase 41.	Coiled-coil domain containing 12.	0.700
DDX41	cdc40	ENSCGOP00000002779	ENSCGOP00000034142	DEAD-box helicase 41.	Cell division cycle 40.	0.745
DDX41	ctnnbl1	ENSCGOP00000002779	ENSCGOP00000051266	DEAD-box helicase 41.	Catenin beta like 1.	0.414
DDX41	cwc22	ENSCGOP00000002779	ENSCGOP00000053737	DEAD-box helicase 41.	CWC22 spliceosome associated protein homolog.	0.753
DDX41	cwc25	ENSCGOP00000002779	ENSCGOP00000023303	DEAD-box helicase 41.	CWC25 spliceosome associated protein homolog.	0.692
DDX41	cwc27	ENSCGOP00000002779	ENSCGOP00000034277	DEAD-box helicase 41.	CWC27 spliceosome associated cyclophilin.	0.481
DDX41	dhx16	ENSCGOP00000002779	ENSCGOP00000004397	DEAD-box helicase 41.	DEAH-box helicase 16.	0.642
DDX41	dhx29	ENSCGOP00000002779	ENSCGOP00000019939	DEAD-box helicase 41.	DExH-box helicase 29.	0.722