20 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	slu7	SLU7 homolog, splicing factor. (600 aa)
	ppil3	Peptidylprolyl isomerase like 3. (161 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (402 aa)
	dhx34	DExH-box helicase 34. (1147 aa)
	ppil1	Peptidylprolyl isomerase like 1. (166 aa)
	prpf18	pre-mRNA processing factor 18. (350 aa)
	cdc40	Cell division cycle 40. (645 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat containing 1. (628 aa)
	LOC115011921	Serine/arginine repetitive matrix protein 2-like. (1244 aa)
	WDR70	WD repeat domain 70. (650 aa)
	syf2	SYF2 pre-mRNA splicing factor. (233 aa)
	dhx35	DEAH-box helicase 35. (700 aa)
	LOC115025076	ATP-dependent RNA helicase DHX8. (1213 aa)
	dhx38	DEAH-box helicase 38. (1249 aa)
	PPIG	Peptidylprolyl isomerase G. (703 aa)
	ccdc12	Coiled-coil domain containing 12. (176 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)
	LOC115027479	SH2 domain-containing adapter protein F-like. (407 aa)
	ENSCGOP00000056318	annotation not available (594 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000056318	LOC115025076	ENSCGOP00000056318	ENSCGOP00000050243	annotation not available	ATP-dependent RNA helicase DHX8.	0.729
ENSCGOP00000056318	LOC115027479	ENSCGOP00000056318	ENSCGOP00000055241	annotation not available	SH2 domain-containing adapter protein F-like.	0.832
ENSCGOP00000056318	PPIG	ENSCGOP00000056318	ENSCGOP00000052152	annotation not available	Peptidylprolyl isomerase G.	0.548
ENSCGOP00000056318	WDR70	ENSCGOP00000056318	ENSCGOP00000037659	annotation not available	WD repeat domain 70.	0.775
ENSCGOP00000056318	ccdc12	ENSCGOP00000056318	ENSCGOP00000053678	annotation not available	Coiled-coil domain containing 12.	0.636
ENSCGOP00000056318	cdc40	ENSCGOP00000056318	ENSCGOP00000034142	annotation not available	Cell division cycle 40.	0.916
ENSCGOP00000056318	cwc22	ENSCGOP00000056318	ENSCGOP00000053737	annotation not available	CWC22 spliceosome associated protein homolog.	0.959
ENSCGOP00000056318	cwc25	ENSCGOP00000056318	ENSCGOP00000023303	annotation not available	CWC25 spliceosome associated protein homolog.	0.931
ENSCGOP00000056318	dhx34	ENSCGOP00000056318	ENSCGOP00000024213	annotation not available	DExH-box helicase 34.	0.729
ENSCGOP00000056318	dhx35	ENSCGOP00000056318	ENSCGOP00000046757	annotation not available	DEAH-box helicase 35.	0.729
ENSCGOP00000056318	dhx38	ENSCGOP00000056318	ENSCGOP00000050649	annotation not available	DEAH-box helicase 38.	0.953
ENSCGOP00000056318	ppil1	ENSCGOP00000056318	ENSCGOP00000031938	annotation not available	Peptidylprolyl isomerase like 1.	0.831
ENSCGOP00000056318	ppil3	ENSCGOP00000056318	ENSCGOP00000007728	annotation not available	Peptidylprolyl isomerase like 3.	0.747
ENSCGOP00000056318	ppwd1	ENSCGOP00000056318	ENSCGOP00000034595	annotation not available	Peptidylprolyl isomerase domain and WD repeat containing 1.	0.795
ENSCGOP00000056318	prpf18	ENSCGOP00000056318	ENSCGOP00000032948	annotation not available	pre-mRNA processing factor 18.	0.687
ENSCGOP00000056318	slu7	ENSCGOP00000056318	ENSCGOP00000006179	annotation not available	SLU7 homolog, splicing factor.	0.931
ENSCGOP00000056318	syf2	ENSCGOP00000056318	ENSCGOP00000039230	annotation not available	SYF2 pre-mRNA splicing factor.	0.952
ENSCGOP00000056318	yju2	ENSCGOP00000056318	ENSCGOP00000055239	annotation not available	YJU2 splicing factor homolog.	0.832
LOC115011921	LOC115025076	ENSCGOP00000034624	ENSCGOP00000050243	Serine/arginine repetitive matrix protein 2-like.	ATP-dependent RNA helicase DHX8.	0.950
LOC115011921	LOC115027479	ENSCGOP00000034624	ENSCGOP00000055241	Serine/arginine repetitive matrix protein 2-like.	SH2 domain-containing adapter protein F-like.	0.832