13 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC115014475	pre-mRNA-processing factor 19-like. (494 aa)
	bud31	BUD31 homolog. (144 aa)
	rbm22	RNA binding motif protein 22. (361 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	ppie	Peptidylprolyl isomerase E. (307 aa)
	xab2	XPA binding protein 2. (829 aa)
	snw1	SNW domain containing 1. (588 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (838 aa)
	ZNF830	Zinc finger protein 830. (338 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (261 aa)
	plrg1	Pleiotropic regulator 1. (512 aa)
	ctnnbl1	Catenin beta like 1. (578 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1495 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC115014475	ZNF830	ENSCGOP00000007325	ENSCGOP00000040593	pre-mRNA-processing factor 19-like.	Zinc finger protein 830.	0.995
LOC115014475	aqr	ENSCGOP00000007325	ENSCGOP00000057052	pre-mRNA-processing factor 19-like.	Aquarius intron-binding spliceosomal factor.	0.999
LOC115014475	bcas2	ENSCGOP00000007325	ENSCGOP00000019878	pre-mRNA-processing factor 19-like.	BCAS2 pre-mRNA processing factor.	0.999
LOC115014475	bud31	ENSCGOP00000007325	ENSCGOP00000012310	pre-mRNA-processing factor 19-like.	BUD31 homolog.	0.994
LOC115014475	crnkl1	ENSCGOP00000007325	ENSCGOP00000039064	pre-mRNA-processing factor 19-like.	Crooked neck pre-mRNA splicing factor 1.	0.996
LOC115014475	ctnnbl1	ENSCGOP00000007325	ENSCGOP00000051266	pre-mRNA-processing factor 19-like.	Catenin beta like 1.	0.997
LOC115014475	cwc15	ENSCGOP00000007325	ENSCGOP00000041548	pre-mRNA-processing factor 19-like.	CWC15 spliceosome associated protein homolog.	0.999
LOC115014475	plrg1	ENSCGOP00000007325	ENSCGOP00000042025	pre-mRNA-processing factor 19-like.	Pleiotropic regulator 1.	0.999
LOC115014475	ppie	ENSCGOP00000007325	ENSCGOP00000026922	pre-mRNA-processing factor 19-like.	Peptidylprolyl isomerase E.	0.999
LOC115014475	rbm22	ENSCGOP00000007325	ENSCGOP00000016098	pre-mRNA-processing factor 19-like.	RNA binding motif protein 22.	0.992
LOC115014475	snw1	ENSCGOP00000007325	ENSCGOP00000031974	pre-mRNA-processing factor 19-like.	SNW domain containing 1.	0.994
LOC115014475	xab2	ENSCGOP00000007325	ENSCGOP00000028536	pre-mRNA-processing factor 19-like.	XPA binding protein 2.	0.999
ZNF830	LOC115014475	ENSCGOP00000040593	ENSCGOP00000007325	Zinc finger protein 830.	pre-mRNA-processing factor 19-like.	0.995
ZNF830	aqr	ENSCGOP00000040593	ENSCGOP00000057052	Zinc finger protein 830.	Aquarius intron-binding spliceosomal factor.	0.997
ZNF830	bud31	ENSCGOP00000040593	ENSCGOP00000012310	Zinc finger protein 830.	BUD31 homolog.	0.982
ZNF830	crnkl1	ENSCGOP00000040593	ENSCGOP00000039064	Zinc finger protein 830.	Crooked neck pre-mRNA splicing factor 1.	0.992
ZNF830	ctnnbl1	ENSCGOP00000040593	ENSCGOP00000051266	Zinc finger protein 830.	Catenin beta like 1.	0.427
ZNF830	ppie	ENSCGOP00000040593	ENSCGOP00000026922	Zinc finger protein 830.	Peptidylprolyl isomerase E.	0.997
ZNF830	rbm22	ENSCGOP00000040593	ENSCGOP00000016098	Zinc finger protein 830.	RNA binding motif protein 22.	0.868
ZNF830	snw1	ENSCGOP00000040593	ENSCGOP00000031974	Zinc finger protein 830.	SNW domain containing 1.	0.996