(16 nodes) Clathrin coat network (Cottoperca gobio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	clta	Clathrin light chain A. (232 aa)
	ap1g1	Adaptor related protein complex 1 subunit gamma 1. (833 aa)
	necap2	NECAP endocytosis associated 2. (255 aa)
	eps15	Epidermal growth factor receptor pathway substrate 15. (1069 aa)
	ap2s1	Adaptor related protein complex 2 subunit sigma 1. (156 aa)
	ap1b1	Adaptor related protein complex 1 subunit beta 1. (955 aa)
	AP2M1	AP-2 complex subunit mu-A. (452 aa)
	ap2a1	Adaptor related protein complex 2 subunit alpha 1. (967 aa)
	LOC115021431	Adaptin ear-binding coat-associated protein 1-like. (253 aa)
	LOC115017313	Clathrin heavy chain 1-like. (1684 aa)
	LOC115004002	Intersectin-2-like. (1594 aa)
	ap4b1	Adaptor related protein complex 4 subunit beta 1. (823 aa)
	LOC115018699	AP-1 complex subunit beta-1. (980 aa)
	LOC115020435	Intersectin-1-like. (1662 aa)
	epn3	Epsin 3. (611 aa)
	itsn2	Intersectin 2. (1602 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP2M1	LOC115004002	ENSCGOP00000026710	ENSCGOP00000041060	AP-2 complex subunit mu-A.	Intersectin-2-like.	0.999
AP2M1	LOC115017313	ENSCGOP00000026710	ENSCGOP00000033359	AP-2 complex subunit mu-A.	Clathrin heavy chain 1-like.	0.869
AP2M1	LOC115018699	ENSCGOP00000026710	ENSCGOP00000047988	AP-2 complex subunit mu-A.	AP-1 complex subunit beta-1.	0.983
AP2M1	LOC115020435	ENSCGOP00000026710	ENSCGOP00000049751	AP-2 complex subunit mu-A.	Intersectin-1-like.	0.997
AP2M1	LOC115021431	ENSCGOP00000026710	ENSCGOP00000031237	AP-2 complex subunit mu-A.	Adaptin ear-binding coat-associated protein 1-like.	0.920
AP2M1	ap1b1	ENSCGOP00000026710	ENSCGOP00000019443	AP-2 complex subunit mu-A.	Adaptor related protein complex 1 subunit beta 1.	0.978
AP2M1	ap1g1	ENSCGOP00000026710	ENSCGOP00000002098	AP-2 complex subunit mu-A.	Adaptor related protein complex 1 subunit gamma 1.	0.910
AP2M1	ap2a1	ENSCGOP00000026710	ENSCGOP00000026724	AP-2 complex subunit mu-A.	Adaptor related protein complex 2 subunit alpha 1.	0.994
AP2M1	ap2s1	ENSCGOP00000026710	ENSCGOP00000017976	AP-2 complex subunit mu-A.	Adaptor related protein complex 2 subunit sigma 1.	0.992
AP2M1	ap4b1	ENSCGOP00000026710	ENSCGOP00000046140	AP-2 complex subunit mu-A.	Adaptor related protein complex 4 subunit beta 1.	0.966
AP2M1	clta	ENSCGOP00000026710	ENSCGOP00000000848	AP-2 complex subunit mu-A.	Clathrin light chain A.	0.908
AP2M1	epn3	ENSCGOP00000026710	ENSCGOP00000054681	AP-2 complex subunit mu-A.	Epsin 3.	0.755
AP2M1	eps15	ENSCGOP00000026710	ENSCGOP00000012677	AP-2 complex subunit mu-A.	Epidermal growth factor receptor pathway substrate 15.	0.877
AP2M1	itsn2	ENSCGOP00000026710	ENSCGOP00000055306	AP-2 complex subunit mu-A.	Intersectin 2.	0.999
AP2M1	necap2	ENSCGOP00000026710	ENSCGOP00000005138	AP-2 complex subunit mu-A.	NECAP endocytosis associated 2.	0.920
LOC115004002	AP2M1	ENSCGOP00000041060	ENSCGOP00000026710	Intersectin-2-like.	AP-2 complex subunit mu-A.	0.999
LOC115004002	LOC115017313	ENSCGOP00000041060	ENSCGOP00000033359	Intersectin-2-like.	Clathrin heavy chain 1-like.	0.994
LOC115004002	LOC115018699	ENSCGOP00000041060	ENSCGOP00000047988	Intersectin-2-like.	AP-1 complex subunit beta-1.	0.999
LOC115004002	LOC115020435	ENSCGOP00000041060	ENSCGOP00000049751	Intersectin-2-like.	Intersectin-1-like.	0.985
LOC115004002	LOC115021431	ENSCGOP00000041060	ENSCGOP00000031237	Intersectin-2-like.	Adaptin ear-binding coat-associated protein 1-like.	0.996