STRINGSTRING
snu13 snu13 snrpc snrpc snrnp25 snrnp25 ppih ppih snrpa1 snrpa1 wbp4 wbp4 LOC115006936 LOC115006936 ENSCGOP00000000548 ENSCGOP00000000548 prpf38a prpf38a rbm22 rbm22 ENSCGOP00000016326 ENSCGOP00000016326 hnrnpk hnrnpk sf3b4 sf3b4 mtrex mtrex ddx23 ddx23 bcas2 bcas2 snrpa snrpa c13h19orf54 c13h19orf54 luc7l luc7l rbm8a rbm8a prpf3 prpf3 LOC115014015 LOC115014015 LOC115014693 LOC115014693 LOC115028947 LOC115028947 usp39 usp39 prkrip1 prkrip1 LOC115022031 LOC115022031 SART1 SART1 rbm17 rbm17 txnl4b txnl4b sf3b6 sf3b6 snrnp200 snrnp200 bud31 bud31 zcrb1 zcrb1 LOC115007802 LOC115007802 c9h9orf78 c9h9orf78 snrpb2 snrpb2 cwf19l2 cwf19l2 ppil3 ppil3 sf3b1 sf3b1 LOC115014475 LOC115014475 slu7 slu7 txnl4a txnl4a LOC115003926 LOC115003926 dhx16 dhx16 snrnp48 snrnp48 DDX41 DDX41 zmat2 zmat2 cdc40 cdc40 snrpd2 snrpd2 casc3 casc3 tfip11 tfip11 prpf18 prpf18 ENSCGOP00000032881 ENSCGOP00000032881 SNIP1 SNIP1 LOC115018662 LOC115018662 snw1 snw1 ppwd1 ppwd1 SMU1 SMU1 cwc27 cwc27 LOC115005997 LOC115005997 tra2a tra2a sf3a3 sf3a3 ppil1 ppil1 u2af2 u2af2 myef2 myef2 pnn pnn gemin2 gemin2 LOC115016452 LOC115016452 lsm4 lsm4 sf3a1 sf3a1 wbp11 wbp11 lsm6 lsm6 adar adar prpf8 prpf8 rnpc3 rnpc3 LOC115016613 LOC115016613 sf3b3 sf3b3 prpf38b prpf38b phf5a phf5a cwc25 cwc25 snrpe snrpe snrnp70 snrnp70 dhx34 dhx34 LOC115022174 LOC115022174 SUGP1 SUGP1 gpkow gpkow ppp1r8 ppp1r8 LOC115023589 LOC115023589 LOC115015412 LOC115015412 lsm7 lsm7 sf3a2 sf3a2 ENSCGOP00000026807 ENSCGOP00000026807 ppie ppie luc7l3 luc7l3 LOC115016751 LOC115016751 ENSCGOP00000027269 ENSCGOP00000027269 hnrnpm hnrnpm xab2 xab2 aqr aqr ENSCGOP00000056961 ENSCGOP00000056961 prpf40a prpf40a LOC115022234 LOC115022234 LOC115027622 LOC115027622 ppil2 ppil2 LOC115027479 LOC115027479 yju2 yju2 snrpd1 snrpd1 prpf39 prpf39 cwc22 cwc22 ccdc12 ccdc12 rnf113a rnf113a LOC115025619 LOC115025619 sf1 sf1 LOC115023575 LOC115023575 ENSCGOP00000051749 ENSCGOP00000051749 ENSCGOP00000051726 ENSCGOP00000051726 LOC115020141 LOC115020141 eif4a3 eif4a3 ctnnbl1 ctnnbl1 snrpd3 snrpd3 dhx38 dhx38 LOC115027894 LOC115027894 LOC115025076 LOC115025076 eftud2 eftud2 LOC115027196 LOC115027196 lsm5 lsm5 dnajc17 dnajc17 LOC115005498 LOC115005498 ccdc130 ccdc130 wdr83 wdr83 rbmx rbmx zrsr2 zrsr2 lsm3 lsm3 ess2 ess2 LOC115018430 LOC115018430 dhx35 dhx35 LOC115027692 LOC115027692 snrpg snrpg LOC115014469 LOC115014469 zmat5 zmat5 aar2 aar2 LOC115026257 LOC115026257 prpf6 prpf6 zcchc8 zcchc8 smndc1 smndc1 lsm2 lsm2 DHX15 DHX15 plrg1 plrg1 mfap1 mfap1 sf3b2 sf3b2 cwc15 cwc15 bud13 bud13 ENSCGOP00000041443 ENSCGOP00000041443 dhx32 dhx32 ZNF830 ZNF830 PDCD7 PDCD7 ENSCGOP00000039752 ENSCGOP00000039752 LOC115012484 LOC115012484 sf3b5 sf3b5 WDR25 WDR25 syf2 syf2 srrm1 srrm1 crnkl1 crnkl1 LOC115005395 LOC115005395 prpf31 prpf31 snrnp40 snrnp40
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snu13Small nuclear ribonucleoprotein 13. (129 aa)
snrpcSmall nuclear ribonucleoprotein polypeptide C. (148 aa)
snrnp25Small nuclear ribonucleoprotein U11/U12 subunit 25. (180 aa)
ppihPeptidylprolyl isomerase H. (229 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (304 aa)
wbp4WW domain binding protein 4. (356 aa)
LOC115006936pre-mRNA-splicing factor 38A-like. (177 aa)
ENSCGOP00000000548annotation not available (200 aa)
prpf38apre-mRNA processing factor 38A. (311 aa)
rbm22RNA binding motif protein 22. (361 aa)
ENSCGOP00000016326annotation not available (212 aa)
hnrnpkHeterogeneous nuclear ribonucleoprotein K. (437 aa)
sf3b4Splicing factor 3b subunit 4. (401 aa)
mtrexMtr4 exosome RNA helicase. (1036 aa)
ddx23DEAD-box helicase 23. (798 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (282 aa)
c13h19orf54Chromosome 13 C19orf54 homolog. (309 aa)
luc7lLUC7 like. (362 aa)
rbm8aRNA binding motif protein 8A. (175 aa)
prpf3pre-mRNA processing factor 3. (701 aa)
LOC115014015Survival motor neuron protein 1-like. (285 aa)
LOC115014693pre-mRNA-processing factor 39-like. (655 aa)
LOC115028947Heterogeneous nuclear ribonucleoprotein Q. (678 aa)
usp39Ubiquitin specific peptidase 39. (502 aa)
prkrip1PRKR interacting protein 1. (189 aa)
LOC115022031Cactin-like. (794 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (774 aa)
rbm17RNA binding motif protein 17. (481 aa)
txnl4bThioredoxin like 4B. (149 aa)
sf3b6Splicing factor 3b subunit 6. (125 aa)
snrnp200Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
bud31BUD31 homolog. (144 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif containing 1. (225 aa)
LOC115007802WD40 repeat-containing protein SMU1-like. (511 aa)
c9h9orf78Chromosome 9 C9orf78 homolog. (292 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (218 aa)
cwf19l2CWF19 like cell cycle control factor 2. (1024 aa)
ppil3Peptidylprolyl isomerase like 3. (161 aa)
sf3b1Splicing factor 3b subunit 1. (1317 aa)
LOC115014475pre-mRNA-processing factor 19-like. (494 aa)
slu7SLU7 homolog, splicing factor. (600 aa)
txnl4aThioredoxin like 4A. (194 aa)
LOC115003926Galectin-3-like. (271 aa)
dhx16DEAH-box helicase 16. (1055 aa)
snrnp48Small nuclear ribonucleoprotein U11/U12 subunit 48. (295 aa)
DDX41DEAD-box helicase 41. (620 aa)
zmat2Zinc finger matrin-type 2. (203 aa)
cdc40Cell division cycle 40. (645 aa)
snrpd2Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
casc3CASC3 exon junction complex subunit. (775 aa)
tfip11Tuftelin interacting protein 11. (831 aa)
prpf18pre-mRNA processing factor 18. (350 aa)
ENSCGOP00000032881annotation not available (534 aa)
SNIP1Smad nuclear interacting protein 1. (382 aa)
LOC115018662HIV Tat-specific factor 1 homolog. (503 aa)
snw1SNW domain containing 1. (588 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (628 aa)
SMU1WD40 repeat-containing protein SMU1. (513 aa)
cwc27CWC27 spliceosome associated cyclophilin. (490 aa)
LOC115005997CWF19-like protein 1. (1058 aa)
tra2aTransformer 2 alpha homolog. (323 aa)
sf3a3Splicing factor 3a subunit 3. (513 aa)
ppil1Peptidylprolyl isomerase like 1. (166 aa)
u2af2U2 small nuclear RNA auxiliary factor 2. (477 aa)
myef2Myelin expression factor 2. (543 aa)
pnnPinin, desmosome associated protein. (691 aa)
gemin2Gem nuclear organelle associated protein 2. (269 aa)
LOC115016452ATP-dependent RNA helicase DQX1-like. (816 aa)
lsm4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
sf3a1Splicing factor 3a subunit 1. (749 aa)
wbp11WW domain binding protein 11. (733 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
adarAdenosine deaminase RNA specific. (1390 aa)
prpf8pre-mRNA processing factor 8. (2332 aa)
rnpc3RNA binding region (RNP1, RRM) containing 3. (482 aa)
LOC115016613Heterogeneous nuclear ribonucleoprotein K-like. (449 aa)
sf3b3Splicing factor 3b subunit 3. (1217 aa)
prpf38bpre-mRNA processing factor 38B. (475 aa)
phf5aPHD finger protein 5A. (110 aa)
cwc25CWC25 spliceosome associated protein homolog. (402 aa)
snrpeSmall nuclear ribonucleoprotein polypeptide E. (101 aa)
snrnp70Small nuclear ribonucleoprotein U1 subunit 70. (354 aa)
dhx34DExH-box helicase 34. (1147 aa)
LOC115022174Cold-inducible RNA-binding protein B-like. (190 aa)
SUGP1SURP and G-patch domain-containing protein 1-like. (628 aa)
gpkowG-patch domain and KOW motifs. (526 aa)
ppp1r8Protein phosphatase 1 regulatory subunit 8. (349 aa)
LOC115023589pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like. (730 aa)
LOC115015412Heterogeneous nuclear ribonucleoprotein R-like. (621 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (147 aa)
sf3a2Splicing factor 3a subunit 2. (293 aa)
ENSCGOP00000026807Serine/arginine repetitive matrix 4. (442 aa)
ppiePeptidylprolyl isomerase E. (307 aa)
luc7l3LUC7 like 3 pre-mRNA splicing factor. (517 aa)
LOC115016751Cold-inducible RNA-binding protein B-like. (175 aa)
ENSCGOP00000027269annotation not available (65 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (665 aa)
xab2XPA binding protein 2. (829 aa)
aqrAquarius intron-binding spliceosomal factor. (1495 aa)
ENSCGOP00000056961Transformer 2 beta homolog. (217 aa)
prpf40apre-mRNA processing factor 40 homolog A. (879 aa)
LOC115022234Heterogeneous nuclear ribonucleoprotein C-like. (319 aa)
LOC115027622Transformer-2 protein homolog alpha-like. (310 aa)
ppil2Peptidylprolyl isomerase like 2. (525 aa)
LOC115027479SH2 domain-containing adapter protein F-like. (407 aa)
yju2YJU2 splicing factor homolog. (343 aa)
snrpd1Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)
prpf39pre-mRNA processing factor 39. (799 aa)
cwc22CWC22 spliceosome associated protein homolog. (1037 aa)
ccdc12Coiled-coil domain containing 12. (176 aa)
rnf113aRing finger protein 113A. (324 aa)
LOC115025619Serine/threonine-protein kinase PRP4 homolog. (853 aa)
sf1Splicing factor 1. (694 aa)
LOC115023575Heterogeneous nuclear ribonucleoprotein C-like. (318 aa)
ENSCGOP00000051749Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ENSCGOP00000051726annotation not available (93 aa)
LOC115020141Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32. (733 aa)
eif4a3Eukaryotic translation initiation factor 4A3. (425 aa)
ctnnbl1Catenin beta like 1. (578 aa)
snrpd3Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
dhx38DEAH-box helicase 38. (1249 aa)
LOC115027894Galectin-3-like. (393 aa)
LOC115025076ATP-dependent RNA helicase DHX8. (1213 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
LOC115027196Heterogeneous nuclear ribonucleoprotein Q-like. (602 aa)
lsm5LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (91 aa)
dnajc17DnaJ heat shock protein family (Hsp40) member C17. (314 aa)
LOC115005498Coiled-coil domain-containing protein 130 homolog. (402 aa)
ccdc130Coiled-coil domain containing 130. (393 aa)
wdr83WD repeat domain 83. (328 aa)
rbmxRNA binding motif protein X-linked. (408 aa)
zrsr2Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2. (628 aa)
lsm3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (102 aa)
ess2Ess-2 splicing factor homolog. (466 aa)
LOC115018430Splicing factor U2AF 35 kDa subunit-like. (228 aa)
dhx35DEAH-box helicase 35. (700 aa)
LOC115027692Galectin-3-like. (301 aa)
snrpgSmall nuclear ribonucleoprotein polypeptide G. (76 aa)
LOC115014469Putative RNA-binding protein Luc7-like 2. (437 aa)
zmat5Zinc finger matrin-type 5. (175 aa)
aar2AAR2 splicing factor. (387 aa)
LOC115026257Splicing factor U2AF 35 kDa subunit. (253 aa)
prpf6pre-mRNA processing factor 6. (1018 aa)
zcchc8Zinc finger CCHC-type containing 8. (736 aa)
smndc1Survival motor neuron domain containing 1. (236 aa)
lsm2LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated. (156 aa)
DHX15pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (765 aa)
plrg1Pleiotropic regulator 1. (512 aa)
mfap1Microfibril associated protein 1. (441 aa)
sf3b2Splicing factor 3b subunit 2. (839 aa)
cwc15CWC15 spliceosome associated protein homolog. (261 aa)
bud13BUD13 homolog. (384 aa)
ENSCGOP00000041443Small nuclear ribonucleoprotein 35 (U11/U12). (201 aa)
dhx32DEAH-box helicase 32 (putative). (739 aa)
ZNF830Zinc finger protein 830. (338 aa)
PDCD7Programmed cell death protein 7-like. (543 aa)
ENSCGOP00000039752annotation not available (175 aa)
LOC115012484Splicing factor U2AF 65 kDa subunit-like. (466 aa)
sf3b5Splicing factor 3b subunit 5. (86 aa)
WDR25WD repeat domain 25. (514 aa)
syf2SYF2 pre-mRNA splicing factor. (233 aa)
srrm1Serine and arginine repetitive matrix 1. (859 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (838 aa)
LOC115005395Cold-inducible RNA-binding protein B-like. (171 aa)
prpf31pre-mRNA processing factor 31. (508 aa)
snrnp40Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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