90 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC115007802	WD40 repeat-containing protein SMU1-like. (511 aa)
	prpf38a	pre-mRNA processing factor 38A. (311 aa)
	ENSCGOP00000000548	annotation not available (200 aa)
	LOC115006936	pre-mRNA-splicing factor 38A-like. (177 aa)
	wbp4	WW domain binding protein 4. (356 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (304 aa)
	snrpc	Small nuclear ribonucleoprotein polypeptide C. (148 aa)
	dhx16	DEAH-box helicase 16. (1055 aa)
	txnl4a	Thioredoxin like 4A. (194 aa)
	snu13	Small nuclear ribonucleoprotein 13. (129 aa)
	LOC115014475	pre-mRNA-processing factor 19-like. (494 aa)
	sf3b1	Splicing factor 3b subunit 1. (1317 aa)
	zmat2	Zinc finger matrin-type 2. (203 aa)
	sf3a3	Splicing factor 3a subunit 3. (513 aa)
	rbm8a	RNA binding motif protein 8A. (175 aa)
	prpf3	pre-mRNA processing factor 3. (701 aa)
	sf3a1	Splicing factor 3a subunit 1. (749 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	rbm22	RNA binding motif protein 22. (361 aa)
	ENSCGOP00000016326	annotation not available (212 aa)
	sf3b4	Splicing factor 3b subunit 4. (401 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	luc7l	LUC7 like. (362 aa)
	sf3b3	Splicing factor 3b subunit 3. (1217 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (402 aa)
	snrpe	Small nuclear ribonucleoprotein polypeptide E. (101 aa)
	dhx34	DExH-box helicase 34. (1147 aa)
	LOC115023589	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like. (730 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (147 aa)
	sf3a2	Splicing factor 3a subunit 2. (293 aa)
	ENSCGOP00000026807	Serine/arginine repetitive matrix 4. (442 aa)
	ppie	Peptidylprolyl isomerase E. (307 aa)
	luc7l3	LUC7 like 3 pre-mRNA splicing factor. (517 aa)
	xab2	XPA binding protein 2. (829 aa)
	lsm4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
	u2af2	U2 small nuclear RNA auxiliary factor 2. (477 aa)
	ppil1	Peptidylprolyl isomerase like 1. (166 aa)
	snw1	SNW domain containing 1. (588 aa)
	LOC115018662	HIV Tat-specific factor 1 homolog. (503 aa)
	SNIP1	Smad nuclear interacting protein 1. (382 aa)
	ENSCGOP00000032881	annotation not available (534 aa)
	prpf18	pre-mRNA processing factor 18. (350 aa)
	tfip11	Tuftelin interacting protein 11. (831 aa)
	casc3	CASC3 exon junction complex subunit. (775 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	cdc40	Cell division cycle 40. (645 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (490 aa)
	SMU1	WD40 repeat-containing protein SMU1. (513 aa)
	LOC115014693	pre-mRNA-processing factor 39-like. (655 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (774 aa)
	sf3b6	Splicing factor 3b subunit 6. (125 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	snrnp40	Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)
	prpf31	pre-mRNA processing factor 31. (508 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (838 aa)
	syf2	SYF2 pre-mRNA splicing factor. (233 aa)
	sf3b5	Splicing factor 3b subunit 5. (86 aa)
	LOC115012484	Splicing factor U2AF 65 kDa subunit-like. (466 aa)
	ENSCGOP00000039752	annotation not available (175 aa)
	bud13	BUD13 homolog. (384 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (261 aa)
	sf3b2	Splicing factor 3b subunit 2. (839 aa)
	mfap1	Microfibril associated protein 1. (441 aa)
	plrg1	Pleiotropic regulator 1. (512 aa)
	DHX15	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (765 aa)
	lsm2	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated. (156 aa)
	prpf6	pre-mRNA processing factor 6. (1018 aa)
	LOC115014469	Putative RNA-binding protein Luc7-like 2. (437 aa)
	snrpg	Small nuclear ribonucleoprotein polypeptide G. (76 aa)
	lsm3	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (102 aa)
	ccdc130	Coiled-coil domain containing 130. (393 aa)
	LOC115005498	Coiled-coil domain-containing protein 130 homolog. (402 aa)
	lsm5	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (91 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	LOC115025076	ATP-dependent RNA helicase DHX8. (1213 aa)
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3. (425 aa)
	ENSCGOP00000051726	annotation not available (93 aa)
	ENSCGOP00000051749	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	rnf113a	Ring finger protein 113A. (324 aa)
	ccdc12	Coiled-coil domain containing 12. (176 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	prpf39	pre-mRNA processing factor 39. (799 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)
	LOC115027479	SH2 domain-containing adapter protein F-like. (407 aa)
	prpf40a	pre-mRNA processing factor 40 homolog A. (879 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1495 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	ENSCGOP00000000548	ENSCGOP00000042411	ENSCGOP00000000548	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	annotation not available	0.471
DHX15	ENSCGOP00000016326	ENSCGOP00000042411	ENSCGOP00000016326	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	annotation not available	0.685
DHX15	ENSCGOP00000032881	ENSCGOP00000042411	ENSCGOP00000032881	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	annotation not available	0.685
DHX15	ENSCGOP00000039752	ENSCGOP00000042411	ENSCGOP00000039752	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	annotation not available	0.471
DHX15	ENSCGOP00000051726	ENSCGOP00000042411	ENSCGOP00000051726	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	annotation not available	0.956
DHX15	ENSCGOP00000051749	ENSCGOP00000042411	ENSCGOP00000051749	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Small nuclear ribonucleoprotein polypeptide F.	0.956
DHX15	LOC115006936	ENSCGOP00000042411	ENSCGOP00000000628	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	pre-mRNA-splicing factor 38A-like.	0.471
DHX15	LOC115007802	ENSCGOP00000042411	ENSCGOP00000000377	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	WD40 repeat-containing protein SMU1-like.	0.439
DHX15	LOC115012484	ENSCGOP00000042411	ENSCGOP00000039549	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Splicing factor U2AF 65 kDa subunit-like.	0.714
DHX15	LOC115014475	ENSCGOP00000042411	ENSCGOP00000007325	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	pre-mRNA-processing factor 19-like.	0.940
DHX15	LOC115018662	ENSCGOP00000042411	ENSCGOP00000032305	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	HIV Tat-specific factor 1 homolog.	0.525
DHX15	LOC115025076	ENSCGOP00000042411	ENSCGOP00000050243	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	ATP-dependent RNA helicase DHX8.	0.871
DHX15	LOC115027479	ENSCGOP00000042411	ENSCGOP00000055241	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	SH2 domain-containing adapter protein F-like.	0.822
DHX15	SART1	ENSCGOP00000042411	ENSCGOP00000036423	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.926
DHX15	SMU1	ENSCGOP00000042411	ENSCGOP00000034406	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	WD40 repeat-containing protein SMU1.	0.442
DHX15	SNIP1	ENSCGOP00000042411	ENSCGOP00000032738	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Smad nuclear interacting protein 1.	0.723
DHX15	aqr	ENSCGOP00000042411	ENSCGOP00000057052	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Aquarius intron-binding spliceosomal factor.	0.855
DHX15	bcas2	ENSCGOP00000042411	ENSCGOP00000019878	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	BCAS2 pre-mRNA processing factor.	0.710
DHX15	bud13	ENSCGOP00000042411	ENSCGOP00000041447	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	BUD13 homolog.	0.757
DHX15	casc3	ENSCGOP00000042411	ENSCGOP00000033451	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	CASC3 exon junction complex subunit.	0.556