143 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nop2	NOP2 nucleolar protein. (740 aa)
	LOC115024327	CUGBP Elav-like family member 4. (459 aa)
	polr2d	RNA polymerase II subunit D. (144 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	prpf31	pre-mRNA processing factor 31. (508 aa)
	ruvbl2	RuvB like AAA ATPase 2. (475 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (838 aa)
	mcts1	MCTS1 re-initiation and release factor. (181 aa)
	LOC115024280	Eukaryotic translation initiation factor 3 subunit C-like. (1091 aa)
	LOC115011839	40S ribosomal protein SA. (310 aa)
	ZNHIT6	Zinc finger HIT-type containing 6. (440 aa)
	lsm2	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated. (156 aa)
	rrs1	Ribosome biogenesis regulator 1 homolog. (347 aa)
	brix1	Biogenesis of ribosomes BRX1. (365 aa)
	prpf6	pre-mRNA processing factor 6. (1018 aa)
	cdc73	Cell division cycle 73. (551 aa)
	shq1	SHQ1, H/ACA ribonucleoprotein assembly factor. (576 aa)
	ENSCGOP00000045689	SR-related CTD-associated factor 11. (981 aa)
	LOC115014469	Putative RNA-binding protein Luc7-like 2. (437 aa)
	snrpg	Small nuclear ribonucleoprotein polypeptide G. (76 aa)
	znhit3	Zinc finger HIT-type containing 3. (134 aa)
	ENSCGOP00000046834	Gem (nuclear organelle) associated protein 8. (202 aa)
	LOC115024399	KH homology domain-containing protein 4-like. (579 aa)
	RAMAC	RNA guanine-7 methyltransferase activating subunit. (129 aa)
	zrsr2	Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2. (628 aa)
	ENSCGOP00000047563	PIH1 domain containing 2. (316 aa)
	eral1	Era like 12S mitochondrial rRNA chaperone 1. (450 aa)
	ruvbl1	RuvB like AAA ATPase 1. (458 aa)
	eif5	Eukaryotic translation initiation factor 5. (431 aa)
	PUF60	poly(U) binding splicing factor 60. (527 aa)
	LOC115022958	tRNA selenocysteine 1-associated protein 1-like. (334 aa)
	dhx30	DExH-box helicase 30. (1165 aa)
	znhit2	Zinc finger HIT-type containing 2. (570 aa)
	ENSCGOP00000050901	annotation not available (461 aa)
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	cpsf6	Cleavage and polyadenylation specific factor 6. (445 aa)
	celf1	CUGBP Elav-like family member 1. (538 aa)
	nudt21	Nudix hydrolase 21. (234 aa)
	rpl23a	Ribosomal protein L23a. (170 aa)
	LOC115010663	Prostaglandin E synthase 3-like. (159 aa)
	ENSCGOP00000035424	Si:dkey-48p11.3. (153 aa)
	usp39	Ubiquitin specific peptidase 39. (502 aa)
	LOC115014693	pre-mRNA-processing factor 39-like. (655 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	sfswap	Splicing factor SWAP. (658 aa)
	CELF2	CUGBP Elav-like family member 2. (529 aa)
	RPL5-2	60S ribosomal protein L5-like. (312 aa)
	prpf18	pre-mRNA processing factor 18. (350 aa)
	ENSCGOP00000032881	annotation not available (534 aa)
	gemin5	Gem nuclear organelle associated protein 5. (1453 aa)
	rpl38	Ribosomal protein L38. (70 aa)
	LOC115019025	Periodic tryptophan protein 2 homolog. (918 aa)
	LOC115010123	CUGBP Elav-like family member 2. (528 aa)
	gemin2	Gem nuclear organelle associated protein 2. (269 aa)
	ENSCGOP00000030502	annotation not available (55 aa)
	psip1	PC4 and SFRS1 interacting protein 1. (382 aa)
	ENSCGOP00000030456	annotation not available (83 aa)
	lsm4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
	LOC115015436	CUGBP Elav-like family member 3. (463 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	xrcc5	X-ray repair cross complementing 5. (722 aa)
	eif4b	Eukaryotic translation initiation factor 4B. (647 aa)
	xab2	XPA binding protein 2. (829 aa)
	prkdc	Protein kinase, DNA-activated, catalytic subunit. (3937 aa)
	nle1	Notchless homolog 1. (478 aa)
	luc7l3	LUC7 like 3 pre-mRNA splicing factor. (517 aa)
	LOC115020833	Eukaryotic translation initiation factor 3 subunit E-A. (472 aa)
	rpl6	Ribosomal protein L6. (257 aa)
	LOC115015699	tRNA selenocysteine 1-associated protein 1-like. (304 aa)
	sf3a2	Splicing factor 3a subunit 2. (293 aa)
	strap	Serine/threonine kinase receptor associated protein. (329 aa)
	snrpe	Small nuclear ribonucleoprotein polypeptide E. (101 aa)
	mrps7	Mitochondrial ribosomal protein S7. (229 aa)
	eif3i	Eukaryotic translation initiation factor 3 subunit I. (325 aa)
	pih1d1	PIH1 domain containing 1. (284 aa)
	eif3a	Eukaryotic translation initiation factor 3 subunit A. (1279 aa)
	eif3g	Eukaryotic translation initiation factor 3 subunit G. (298 aa)
	luc7l	LUC7 like. (362 aa)
	dhx29	DExH-box helicase 29. (1281 aa)
	gemin4	Gem nuclear organelle associated protein 4. (1150 aa)
	ptges3	Prostaglandin E synthase 3. (169 aa)
	ENSCGOP00000019198	annotation not available (77 aa)
	ENSCGOP00000018691	Gem (nuclear organelle) associated protein 7. (124 aa)
	eif2d	Eukaryotic translation initiation factor 2D. (611 aa)
	clns1a	Chloride nucleotide-sensitive channel 1A. (252 aa)
	traf7	TNF receptor associated factor 7. (695 aa)
	LOC115015508	Protein argonaute-4. (882 aa)
	ENSCGOP00000016326	annotation not available (212 aa)
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	naf1	Nuclear assembly factor 1 ribonucleoprotein. (401 aa)
	adar	Adenosine deaminase RNA specific. (1390 aa)
	LOC115011091	SRSF protein kinase 3-like. (408 aa)
	rpf2	Ribosome production factor 2 homolog. (315 aa)
	LOC115021555	40S ribosomal protein S27-like. (84 aa)
	rrp7a	Ribosomal RNA processing 7 homolog A. (311 aa)
	sf3a1	Splicing factor 3a subunit 1. (749 aa)
	rps5	Ribosomal protein S5. (205 aa)
	prmt7	Protein arginine methyltransferase 7. (686 aa)
	LOC115015575	Eukaryotic translation initiation factor 3 subunit E-B. (459 aa)
	sart3	Spliceosome associated factor 3, U4/U6 recycling protein. (937 aa)
	LOC115014015	Survival motor neuron protein 1-like. (285 aa)
	rps27l	Ribosomal protein S27 like. (84 aa)
	prpf3	pre-mRNA processing factor 3. (701 aa)
	LOC115007845	CUGBP Elav-like family member 4. (525 aa)
	nufip1	Nuclear FMR1 interacting protein 1. (529 aa)
	sf3a3	Splicing factor 3a subunit 3. (513 aa)
	RPL5	Ribosomal protein L5. (301 aa)
	LOC115008351	SRSF protein kinase 1-like. (662 aa)
	LOC115020855	CUGBP Elav-like family member 3. (462 aa)
	denr	Density regulated re-initiation and release factor. (199 aa)
	CPSF7	Cleavage and polyadenylation specific factor 7. (445 aa)
	eif3b	Eukaryotic translation initiation factor 3 subunit B. (680 aa)
	sf3b1	Splicing factor 3b subunit 1. (1317 aa)
	LOC115014475	pre-mRNA-processing factor 19-like. (494 aa)
	LOC115006695	40S ribosomal protein S27-like. (83 aa)
	snu13	Small nuclear ribonucleoprotein 13. (129 aa)
	HDGF	Heparin binding growth factor. (223 aa)
	ENSCGOP00000006191	annotation not available (125 aa)
	LOC115006669	CUGBP Elav-like family member 5. (524 aa)
	eif3m	Eukaryotic translation initiation factor 3 subunit M. (375 aa)
	mrpl20	Mitochondrial ribosomal protein L20. (149 aa)
	eif3j	Eukaryotic translation initiation factor 3 subunit J. (218 aa)
	prmt5	Protein arginine methyltransferase 5. (672 aa)
	eif3k	Eukaryotic translation initiation factor 3 subunit K. (220 aa)
	mrm2	Mitochondrial rRNA methyltransferase 2. (222 aa)
	ENSCGOP00000003463	Coiled-coil domain containing 105. (322 aa)
	eif3h	Eukaryotic translation initiation factor 3 subunit H. (341 aa)
	khdc4	KH domain containing 4, pre-mRNA splicing factor. (603 aa)
	ddx20	DEAD-box helicase 20. (816 aa)
	snrpc	Small nuclear ribonucleoprotein polypeptide C. (148 aa)
	eif3d	Eukaryotic translation initiation factor 3 subunit D. (550 aa)
	LOC115008805	SRSF protein kinase 2-like. (550 aa)
	mrps11	Mitochondrial ribosomal protein S11. (198 aa)
	ddx28	DEAD-box helicase 28. (567 aa)
	ENSCGOP00000051726	annotation not available (93 aa)
	ENSCGOP00000051749	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	fastkd2	FAST kinase domains 2. (717 aa)
	prpf39	pre-mRNA processing factor 39. (799 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)
	LOC115027479	SH2 domain-containing adapter protein F-like. (407 aa)
	mrto4	MRT4 homolog, ribosome maturation factor. (236 aa)
	srpk1	SRSF protein kinase 1. (663 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CELF2	snu13	ENSCGOP00000033190	ENSCGOP00000006340	CUGBP Elav-like family member 2.	Small nuclear ribonucleoprotein 13.	0.444
CPSF7	LOC115014475	ENSCGOP00000007883	ENSCGOP00000007325	Cleavage and polyadenylation specific factor 7.	pre-mRNA-processing factor 19-like.	0.408
CPSF7	cpsf6	ENSCGOP00000007883	ENSCGOP00000051230	Cleavage and polyadenylation specific factor 7.	Cleavage and polyadenylation specific factor 6.	0.849
CPSF7	nudt21	ENSCGOP00000007883	ENSCGOP00000037029	Cleavage and polyadenylation specific factor 7.	Nudix hydrolase 21.	0.978
CPSF7	zrsr2	ENSCGOP00000007883	ENSCGOP00000047173	Cleavage and polyadenylation specific factor 7.	Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2.	0.670
ENSCGOP00000003463	ENSCGOP00000006191	ENSCGOP00000003463	ENSCGOP00000006191	Coiled-coil domain containing 105.	annotation not available	0.992
ENSCGOP00000003463	ENSCGOP00000030456	ENSCGOP00000003463	ENSCGOP00000030456	Coiled-coil domain containing 105.	annotation not available	0.971
ENSCGOP00000003463	LOC115006695	ENSCGOP00000003463	ENSCGOP00000006828	Coiled-coil domain containing 105.	40S ribosomal protein S27-like.	0.971
ENSCGOP00000003463	LOC115011839	ENSCGOP00000003463	ENSCGOP00000040771	Coiled-coil domain containing 105.	40S ribosomal protein SA.	0.995
ENSCGOP00000003463	LOC115015575	ENSCGOP00000003463	ENSCGOP00000011896	Coiled-coil domain containing 105.	Eukaryotic translation initiation factor 3 subunit E-B.	0.934
ENSCGOP00000003463	LOC115015699	ENSCGOP00000003463	ENSCGOP00000026498	Coiled-coil domain containing 105.	tRNA selenocysteine 1-associated protein 1-like.	0.438
ENSCGOP00000003463	LOC115019025	ENSCGOP00000003463	ENSCGOP00000030940	Coiled-coil domain containing 105.	Periodic tryptophan protein 2 homolog.	0.941
ENSCGOP00000003463	LOC115020833	ENSCGOP00000003463	ENSCGOP00000026816	Coiled-coil domain containing 105.	Eukaryotic translation initiation factor 3 subunit E-A.	0.934
ENSCGOP00000003463	LOC115021555	ENSCGOP00000003463	ENSCGOP00000014639	Coiled-coil domain containing 105.	40S ribosomal protein S27-like.	0.971
ENSCGOP00000003463	LOC115022958	ENSCGOP00000003463	ENSCGOP00000050393	Coiled-coil domain containing 105.	tRNA selenocysteine 1-associated protein 1-like.	0.438
ENSCGOP00000003463	LOC115024280	ENSCGOP00000003463	ENSCGOP00000040371	Coiled-coil domain containing 105.	Eukaryotic translation initiation factor 3 subunit C-like.	0.963
ENSCGOP00000003463	RPL5	ENSCGOP00000003463	ENSCGOP00000010061	Coiled-coil domain containing 105.	Ribosomal protein L5.	0.982
ENSCGOP00000003463	RPL5-2	ENSCGOP00000003463	ENSCGOP00000033130	Coiled-coil domain containing 105.	60S ribosomal protein L5-like.	0.982
ENSCGOP00000003463	ddx20	ENSCGOP00000003463	ENSCGOP00000002995	Coiled-coil domain containing 105.	DEAD-box helicase 20.	0.496
ENSCGOP00000003463	ddx28	ENSCGOP00000003463	ENSCGOP00000000422	Coiled-coil domain containing 105.	DEAD-box helicase 28.	0.541