(16 nodes) SMN-Sm protein complex network (Cottoperca gobio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	strap	Serine/threonine kinase receptor associated protein. (329 aa)
	gemin2	Gem nuclear organelle associated protein 2. (269 aa)
	gemin5	Gem nuclear organelle associated protein 5. (1453 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	snrpg	Small nuclear ribonucleoprotein polypeptide G. (76 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)
	ddx20	DEAD-box helicase 20. (816 aa)
	ENSCGOP00000019198	annotation not available (77 aa)
	ENSCGOP00000018691	Gem (nuclear organelle) associated protein 7. (124 aa)
	LOC115014015	Survival motor neuron protein 1-like. (285 aa)
	ENSCGOP00000046834	Gem (nuclear organelle) associated protein 8. (202 aa)
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	ENSCGOP00000051726	annotation not available (93 aa)
	ENSCGOP00000051749	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	gemin4	Gem nuclear organelle associated protein 4. (1150 aa)
	snrpe	Small nuclear ribonucleoprotein polypeptide E. (101 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000018691	ENSCGOP00000019198	ENSCGOP00000018691	ENSCGOP00000019198	Gem (nuclear organelle) associated protein 7.	annotation not available	0.820
ENSCGOP00000018691	ENSCGOP00000046834	ENSCGOP00000018691	ENSCGOP00000046834	Gem (nuclear organelle) associated protein 7.	Gem (nuclear organelle) associated protein 8.	0.991
ENSCGOP00000018691	ENSCGOP00000051726	ENSCGOP00000018691	ENSCGOP00000051726	Gem (nuclear organelle) associated protein 7.	annotation not available	0.660
ENSCGOP00000018691	ENSCGOP00000051749	ENSCGOP00000018691	ENSCGOP00000051749	Gem (nuclear organelle) associated protein 7.	Small nuclear ribonucleoprotein polypeptide F.	0.660
ENSCGOP00000018691	LOC115014015	ENSCGOP00000018691	ENSCGOP00000011540	Gem (nuclear organelle) associated protein 7.	Survival motor neuron protein 1-like.	0.940
ENSCGOP00000018691	ddx20	ENSCGOP00000018691	ENSCGOP00000002995	Gem (nuclear organelle) associated protein 7.	DEAD-box helicase 20.	0.988
ENSCGOP00000018691	gemin2	ENSCGOP00000018691	ENSCGOP00000030579	Gem (nuclear organelle) associated protein 7.	Gem nuclear organelle associated protein 2.	0.884
ENSCGOP00000018691	gemin4	ENSCGOP00000018691	ENSCGOP00000019306	Gem (nuclear organelle) associated protein 7.	Gem nuclear organelle associated protein 4.	0.953
ENSCGOP00000018691	gemin5	ENSCGOP00000018691	ENSCGOP00000031506	Gem (nuclear organelle) associated protein 7.	Gem nuclear organelle associated protein 5.	0.936
ENSCGOP00000018691	snrpd1	ENSCGOP00000018691	ENSCGOP00000054741	Gem (nuclear organelle) associated protein 7.	Small nuclear ribonucleoprotein D1 polypeptide.	0.769
ENSCGOP00000018691	snrpd2	ENSCGOP00000018691	ENSCGOP00000033977	Gem (nuclear organelle) associated protein 7.	Small nuclear ribonucleoprotein D2 polypeptide.	0.686
ENSCGOP00000018691	snrpd3	ENSCGOP00000018691	ENSCGOP00000050914	Gem (nuclear organelle) associated protein 7.	Small nuclear ribonucleoprotein D3 polypeptide.	0.714
ENSCGOP00000018691	snrpe	ENSCGOP00000018691	ENSCGOP00000024158	Gem (nuclear organelle) associated protein 7.	Small nuclear ribonucleoprotein polypeptide E.	0.828
ENSCGOP00000018691	snrpg	ENSCGOP00000018691	ENSCGOP00000045929	Gem (nuclear organelle) associated protein 7.	Small nuclear ribonucleoprotein polypeptide G.	0.723
ENSCGOP00000018691	strap	ENSCGOP00000018691	ENSCGOP00000025130	Gem (nuclear organelle) associated protein 7.	Serine/threonine kinase receptor associated protein.	0.938
ENSCGOP00000019198	ENSCGOP00000018691	ENSCGOP00000019198	ENSCGOP00000018691	annotation not available	Gem (nuclear organelle) associated protein 7.	0.820
ENSCGOP00000019198	ENSCGOP00000046834	ENSCGOP00000019198	ENSCGOP00000046834	annotation not available	Gem (nuclear organelle) associated protein 8.	0.795
ENSCGOP00000019198	ENSCGOP00000051726	ENSCGOP00000019198	ENSCGOP00000051726	annotation not available	annotation not available	0.649
ENSCGOP00000019198	ENSCGOP00000051749	ENSCGOP00000019198	ENSCGOP00000051749	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.649
ENSCGOP00000019198	LOC115014015	ENSCGOP00000019198	ENSCGOP00000011540	annotation not available	Survival motor neuron protein 1-like.	0.735