28 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	prpf3	pre-mRNA processing factor 3. (701 aa)
	zmat2	Zinc finger matrin-type 2. (203 aa)
	snu13	Small nuclear ribonucleoprotein 13. (129 aa)
	txnl4a	Thioredoxin like 4A. (194 aa)
	lsm5	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (91 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	ENSCGOP00000051726	annotation not available (93 aa)
	ENSCGOP00000051749	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)
	txnl4b	Thioredoxin like 4B. (149 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	snrnp40	Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)
	prpf31	pre-mRNA processing factor 31. (508 aa)
	lsm2	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated. (156 aa)
	prpf6	pre-mRNA processing factor 6. (1018 aa)
	lsm3	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (102 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (774 aa)
	usp39	Ubiquitin specific peptidase 39. (502 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	prpf18	pre-mRNA processing factor 18. (350 aa)
	lsm4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (147 aa)
	snrpe	Small nuclear ribonucleoprotein polypeptide E. (101 aa)
	c13h19orf54	Chromosome 13 C19orf54 homolog. (309 aa)
	ddx23	DEAD-box helicase 23. (798 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000051726	SART1	ENSCGOP00000051726	ENSCGOP00000036423	annotation not available	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.936
ENSCGOP00000051726	c13h19orf54	ENSCGOP00000051726	ENSCGOP00000020269	annotation not available	Chromosome 13 C19orf54 homolog.	0.969
ENSCGOP00000051726	ddx23	ENSCGOP00000051726	ENSCGOP00000018564	annotation not available	DEAD-box helicase 23.	0.968
ENSCGOP00000051726	eftud2	ENSCGOP00000051726	ENSCGOP00000049983	annotation not available	Elongation factor Tu GTP binding domain containing 2.	0.981
ENSCGOP00000051726	lsm2	ENSCGOP00000051726	ENSCGOP00000042566	annotation not available	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.993
ENSCGOP00000051726	lsm3	ENSCGOP00000051726	ENSCGOP00000047038	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.971
ENSCGOP00000051726	lsm4	ENSCGOP00000051726	ENSCGOP00000030293	annotation not available	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.974
ENSCGOP00000051726	lsm5	ENSCGOP00000051726	ENSCGOP00000049311	annotation not available	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.988
ENSCGOP00000051726	lsm6	ENSCGOP00000051726	ENSCGOP00000014998	annotation not available	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.972
ENSCGOP00000051726	lsm7	ENSCGOP00000051726	ENSCGOP00000025971	annotation not available	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.982
ENSCGOP00000051726	prpf18	ENSCGOP00000051726	ENSCGOP00000032948	annotation not available	pre-mRNA processing factor 18.	0.783
ENSCGOP00000051726	prpf3	ENSCGOP00000051726	ENSCGOP00000011180	annotation not available	pre-mRNA processing factor 3.	0.953
ENSCGOP00000051726	prpf31	ENSCGOP00000051726	ENSCGOP00000038716	annotation not available	pre-mRNA processing factor 31.	0.964
ENSCGOP00000051726	prpf6	ENSCGOP00000051726	ENSCGOP00000044380	annotation not available	pre-mRNA processing factor 6.	0.967
ENSCGOP00000051726	prpf8	ENSCGOP00000051726	ENSCGOP00000016018	annotation not available	pre-mRNA processing factor 8.	0.979
ENSCGOP00000051726	snrnp200	ENSCGOP00000051726	ENSCGOP00000038205	annotation not available	Small nuclear ribonucleoprotein U5 subunit 200.	0.978
ENSCGOP00000051726	snrnp40	ENSCGOP00000051726	ENSCGOP00000038247	annotation not available	Small nuclear ribonucleoprotein U5 subunit 40.	0.970
ENSCGOP00000051726	snrpd1	ENSCGOP00000051726	ENSCGOP00000054741	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.998
ENSCGOP00000051726	snrpd2	ENSCGOP00000051726	ENSCGOP00000033977	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.998
ENSCGOP00000051726	snrpd3	ENSCGOP00000051726	ENSCGOP00000050914	annotation not available	Small nuclear ribonucleoprotein D3 polypeptide.	0.998