(46 nodes) Synaptic vesicle endocytosis network (Cottoperca gobio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC115028938	Clathrin coat assembly protein AP180-like. (583 aa)
	LOC115018672	Neuroligin-2-like. (877 aa)
	itsn2	Intersectin 2. (1602 aa)
	fcho2	FCH and mu domain containing endocytic adaptor 2. (1016 aa)
	dnm1	Dynamin 1. (861 aa)
	LOC115011671	Dynamin-2-like. (871 aa)
	LOC115005566	Dynamin-1-like. (821 aa)
	LOC115024519	Synaptotagmin-1-like. (359 aa)
	LOC115020435	Intersectin-1-like. (1662 aa)
	LOC115017221	Alpha-synuclein-like. (143 aa)
	ENSCGOP00000043379	Neuroligin 1. (880 aa)
	LOC115019064	Neuroligin-3-like. (820 aa)
	synj1	Synaptojanin 1. (1337 aa)
	LOC115004002	Intersectin-2-like. (1594 aa)
	nostrin	Nitric oxide synthase trafficking. (548 aa)
	LOC115022037	endophilin-A2-like. (368 aa)
	ENSCGOP00000036465	annotation not available (481 aa)
	ENSCGOP00000034545	annotation not available (926 aa)
	nlgn3	Neuroligin 3. (856 aa)
	LOC115006296	Alpha-synuclein-like. (113 aa)
	LOC115022205	Dynamin-3-like. (812 aa)
	LOC115026114	Neuroligin-4, X-linked-like. (876 aa)
	sncb	Synuclein beta. (117 aa)
	LOC115007144	endophilin-A2-like. (351 aa)
	LOC115023551	endophilin-A1-like. (358 aa)
	LOC115018414	Phosphatidylinositol-binding clathrin assembly protein-like. (726 aa)
	picalm	Phosphatidylinositol binding clathrin assembly protein. (736 aa)
	LOC115021300	Dynamin-2-like. (869 aa)
	LOC115016650	DENN domain-containing protein 1A-like. (929 aa)
	ENSCGOP00000016520	General transcription factor IIA, 1-like. (706 aa)
	LOC115006712	AP2-interacting clathrin-endocytosis protein-like. (1554 aa)
	syt1	Synaptotagmin 1. (417 aa)
	LOC115018632	Phosphatidylinositol-binding clathrin assembly protein-like. (689 aa)
	LOC115023467	Neuroligin-2-like. (835 aa)
	ENSCGOP00000009879	annotation not available (412 aa)
	LOC115023971	Neuroligin-2-like. (178 aa)
	LOC115027468	endophilin-A3-like. (383 aa)
	ENSCGOP00000006951	Synaptotagmin Ib. (241 aa)
	ENSCGOP00000006947	annotation not available (189 aa)
	nlgn4x	Neuroligin 4 X-linked. (840 aa)
	LOC115024537	Synuclein-like. (113 aa)
	cdk5	Cyclin dependent kinase 5. (292 aa)
	dnm3	Dynamin 3. (800 aa)
	LOC115008409	Synaptotagmin-2-like. (433 aa)
	LOC115010481	Synaptotagmin-2-like. (429 aa)
	SH3GL2	SH3 domain containing GRB2 like 2, endophilin A1. (357 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000006947	ENSCGOP00000006951	ENSCGOP00000006947	ENSCGOP00000006951	annotation not available	Synaptotagmin Ib.	0.536
ENSCGOP00000006947	ENSCGOP00000036465	ENSCGOP00000006947	ENSCGOP00000036465	annotation not available	annotation not available	0.547
ENSCGOP00000006947	LOC115004002	ENSCGOP00000006947	ENSCGOP00000041060	annotation not available	Intersectin-2-like.	0.705
ENSCGOP00000006947	LOC115007144	ENSCGOP00000006947	ENSCGOP00000026113	annotation not available	endophilin-A2-like.	0.471
ENSCGOP00000006947	LOC115018414	ENSCGOP00000006947	ENSCGOP00000024424	annotation not available	Phosphatidylinositol-binding clathrin assembly protein-like.	0.547
ENSCGOP00000006947	LOC115018632	ENSCGOP00000006947	ENSCGOP00000011651	annotation not available	Phosphatidylinositol-binding clathrin assembly protein-like.	0.547
ENSCGOP00000006947	LOC115020435	ENSCGOP00000006947	ENSCGOP00000049751	annotation not available	Intersectin-1-like.	0.618
ENSCGOP00000006947	LOC115022037	ENSCGOP00000006947	ENSCGOP00000036489	annotation not available	endophilin-A2-like.	0.471
ENSCGOP00000006947	LOC115023551	ENSCGOP00000006947	ENSCGOP00000025539	annotation not available	endophilin-A1-like.	0.471
ENSCGOP00000006947	LOC115027468	ENSCGOP00000006947	ENSCGOP00000008358	annotation not available	endophilin-A3-like.	0.471
ENSCGOP00000006947	LOC115028938	ENSCGOP00000006947	ENSCGOP00000031291	annotation not available	Clathrin coat assembly protein AP180-like.	0.547
ENSCGOP00000006947	SH3GL2	ENSCGOP00000006947	ENSCGOP00000000209	annotation not available	SH3 domain containing GRB2 like 2, endophilin A1.	0.471
ENSCGOP00000006947	fcho2	ENSCGOP00000006947	ENSCGOP00000055210	annotation not available	FCH and mu domain containing endocytic adaptor 2.	0.408
ENSCGOP00000006947	itsn2	ENSCGOP00000006947	ENSCGOP00000055306	annotation not available	Intersectin 2.	0.705
ENSCGOP00000006947	picalm	ENSCGOP00000006947	ENSCGOP00000024333	annotation not available	Phosphatidylinositol binding clathrin assembly protein.	0.547
ENSCGOP00000006951	ENSCGOP00000006947	ENSCGOP00000006951	ENSCGOP00000006947	Synaptotagmin Ib.	annotation not available	0.536
ENSCGOP00000006951	ENSCGOP00000036465	ENSCGOP00000006951	ENSCGOP00000036465	Synaptotagmin Ib.	annotation not available	0.547
ENSCGOP00000006951	LOC115004002	ENSCGOP00000006951	ENSCGOP00000041060	Synaptotagmin Ib.	Intersectin-2-like.	0.705
ENSCGOP00000006951	LOC115007144	ENSCGOP00000006951	ENSCGOP00000026113	Synaptotagmin Ib.	endophilin-A2-like.	0.471
ENSCGOP00000006951	LOC115018414	ENSCGOP00000006951	ENSCGOP00000024424	Synaptotagmin Ib.	Phosphatidylinositol-binding clathrin assembly protein-like.	0.547