46 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC115007802	WD40 repeat-containing protein SMU1-like. (511 aa)
	prpf38a	pre-mRNA processing factor 38A. (311 aa)
	ENSCGOP00000000548	annotation not available (200 aa)
	LOC115006936	pre-mRNA-splicing factor 38A-like. (177 aa)
	wbp4	WW domain binding protein 4. (356 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (304 aa)
	dhx16	DEAH-box helicase 16. (1055 aa)
	txnl4a	Thioredoxin like 4A. (194 aa)
	snu13	Small nuclear ribonucleoprotein 13. (129 aa)
	sf3b1	Splicing factor 3b subunit 1. (1317 aa)
	zmat2	Zinc finger matrin-type 2. (203 aa)
	sf3a3	Splicing factor 3a subunit 3. (513 aa)
	prpf3	pre-mRNA processing factor 3. (701 aa)
	sf3a1	Splicing factor 3a subunit 1. (749 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	sf3b4	Splicing factor 3b subunit 4. (401 aa)
	sf3b3	Splicing factor 3b subunit 3. (1217 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	snrpe	Small nuclear ribonucleoprotein polypeptide E. (101 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (147 aa)
	sf3a2	Splicing factor 3a subunit 2. (293 aa)
	lsm4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
	SNIP1	Smad nuclear interacting protein 1. (382 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (490 aa)
	SMU1	WD40 repeat-containing protein SMU1. (513 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (774 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	prpf31	pre-mRNA processing factor 31. (508 aa)
	sf3b5	Splicing factor 3b subunit 5. (86 aa)
	ENSCGOP00000039752	annotation not available (175 aa)
	bud13	BUD13 homolog. (384 aa)
	sf3b2	Splicing factor 3b subunit 2. (839 aa)
	mfap1	Microfibril associated protein 1. (441 aa)
	lsm2	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated. (156 aa)
	prpf6	pre-mRNA processing factor 6. (1018 aa)
	lsm3	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (102 aa)
	lsm5	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (91 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	ENSCGOP00000051726	annotation not available (93 aa)
	ENSCGOP00000051749	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	rnf113a	Ring finger protein 113A. (324 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000000548	ENSCGOP00000051726	ENSCGOP00000000548	ENSCGOP00000051726	annotation not available	annotation not available	0.615
ENSCGOP00000000548	ENSCGOP00000051749	ENSCGOP00000000548	ENSCGOP00000051749	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.615
ENSCGOP00000000548	LOC115007802	ENSCGOP00000000548	ENSCGOP00000000377	annotation not available	WD40 repeat-containing protein SMU1-like.	0.875
ENSCGOP00000000548	SART1	ENSCGOP00000000548	ENSCGOP00000036423	annotation not available	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.775
ENSCGOP00000000548	SMU1	ENSCGOP00000000548	ENSCGOP00000034406	annotation not available	WD40 repeat-containing protein SMU1.	0.893
ENSCGOP00000000548	SNIP1	ENSCGOP00000000548	ENSCGOP00000032738	annotation not available	Smad nuclear interacting protein 1.	0.675
ENSCGOP00000000548	bud13	ENSCGOP00000000548	ENSCGOP00000041447	annotation not available	BUD13 homolog.	0.652
ENSCGOP00000000548	cwc22	ENSCGOP00000000548	ENSCGOP00000053737	annotation not available	CWC22 spliceosome associated protein homolog.	0.408
ENSCGOP00000000548	cwc27	ENSCGOP00000000548	ENSCGOP00000034277	annotation not available	CWC27 spliceosome associated cyclophilin.	0.529
ENSCGOP00000000548	dhx16	ENSCGOP00000000548	ENSCGOP00000004397	annotation not available	DEAH-box helicase 16.	0.464
ENSCGOP00000000548	eftud2	ENSCGOP00000000548	ENSCGOP00000049983	annotation not available	Elongation factor Tu GTP binding domain containing 2.	0.696
ENSCGOP00000000548	lsm2	ENSCGOP00000000548	ENSCGOP00000042566	annotation not available	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.727
ENSCGOP00000000548	lsm3	ENSCGOP00000000548	ENSCGOP00000047038	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.732
ENSCGOP00000000548	lsm4	ENSCGOP00000000548	ENSCGOP00000030293	annotation not available	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.725
ENSCGOP00000000548	lsm5	ENSCGOP00000000548	ENSCGOP00000049311	annotation not available	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.763
ENSCGOP00000000548	lsm6	ENSCGOP00000000548	ENSCGOP00000014998	annotation not available	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.721
ENSCGOP00000000548	lsm7	ENSCGOP00000000548	ENSCGOP00000025971	annotation not available	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.714
ENSCGOP00000000548	mfap1	ENSCGOP00000000548	ENSCGOP00000041955	annotation not available	Microfibril associated protein 1.	0.968
ENSCGOP00000000548	phf5a	ENSCGOP00000000548	ENSCGOP00000023193	annotation not available	PHD finger protein 5A.	0.698
ENSCGOP00000000548	prpf3	ENSCGOP00000000548	ENSCGOP00000011180	annotation not available	pre-mRNA processing factor 3.	0.855