11 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	rbm8a	RNA binding motif protein 8A. (175 aa)
	LOC115014475	pre-mRNA-processing factor 19-like. (494 aa)
	LOC115027479	SH2 domain-containing adapter protein F-like. (407 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3. (425 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	casc3	CASC3 exon junction complex subunit. (775 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (402 aa)
	rbm22	RNA binding motif protein 22. (361 aa)
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC115014475	LOC115027479	ENSCGOP00000007325	ENSCGOP00000055241	pre-mRNA-processing factor 19-like.	SH2 domain-containing adapter protein F-like.	0.915
LOC115014475	casc3	ENSCGOP00000007325	ENSCGOP00000033451	pre-mRNA-processing factor 19-like.	CASC3 exon junction complex subunit.	0.770
LOC115014475	cwc22	ENSCGOP00000007325	ENSCGOP00000053737	pre-mRNA-processing factor 19-like.	CWC22 spliceosome associated protein homolog.	0.995
LOC115014475	cwc25	ENSCGOP00000007325	ENSCGOP00000023303	pre-mRNA-processing factor 19-like.	CWC25 spliceosome associated protein homolog.	0.993
LOC115014475	eif4a3	ENSCGOP00000007325	ENSCGOP00000051634	pre-mRNA-processing factor 19-like.	Eukaryotic translation initiation factor 4A3.	0.947
LOC115014475	prpf8	ENSCGOP00000007325	ENSCGOP00000016018	pre-mRNA-processing factor 19-like.	pre-mRNA processing factor 8.	0.996
LOC115014475	rbm22	ENSCGOP00000007325	ENSCGOP00000016098	pre-mRNA-processing factor 19-like.	RNA binding motif protein 22.	0.992
LOC115014475	rbm8a	ENSCGOP00000007325	ENSCGOP00000010980	pre-mRNA-processing factor 19-like.	RNA binding motif protein 8A.	0.794
LOC115014475	snrnp200	ENSCGOP00000007325	ENSCGOP00000038205	pre-mRNA-processing factor 19-like.	Small nuclear ribonucleoprotein U5 subunit 200.	0.994
LOC115014475	yju2	ENSCGOP00000007325	ENSCGOP00000055239	pre-mRNA-processing factor 19-like.	YJU2 splicing factor homolog.	0.992
LOC115027479	LOC115014475	ENSCGOP00000055241	ENSCGOP00000007325	SH2 domain-containing adapter protein F-like.	pre-mRNA-processing factor 19-like.	0.915
LOC115027479	casc3	ENSCGOP00000055241	ENSCGOP00000033451	SH2 domain-containing adapter protein F-like.	CASC3 exon junction complex subunit.	0.669
LOC115027479	cwc22	ENSCGOP00000055241	ENSCGOP00000053737	SH2 domain-containing adapter protein F-like.	CWC22 spliceosome associated protein homolog.	0.980
LOC115027479	cwc25	ENSCGOP00000055241	ENSCGOP00000023303	SH2 domain-containing adapter protein F-like.	CWC25 spliceosome associated protein homolog.	0.996
LOC115027479	eif4a3	ENSCGOP00000055241	ENSCGOP00000051634	SH2 domain-containing adapter protein F-like.	Eukaryotic translation initiation factor 4A3.	0.785
LOC115027479	prpf8	ENSCGOP00000055241	ENSCGOP00000016018	SH2 domain-containing adapter protein F-like.	pre-mRNA processing factor 8.	0.920
LOC115027479	rbm22	ENSCGOP00000055241	ENSCGOP00000016098	SH2 domain-containing adapter protein F-like.	RNA binding motif protein 22.	0.764
LOC115027479	rbm8a	ENSCGOP00000055241	ENSCGOP00000010980	SH2 domain-containing adapter protein F-like.	RNA binding motif protein 8A.	0.669
LOC115027479	snrnp200	ENSCGOP00000055241	ENSCGOP00000038205	SH2 domain-containing adapter protein F-like.	Small nuclear ribonucleoprotein U5 subunit 200.	0.940
casc3	LOC115014475	ENSCGOP00000033451	ENSCGOP00000007325	CASC3 exon junction complex subunit.	pre-mRNA-processing factor 19-like.	0.770