26 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpe	Small nuclear ribonucleoprotein polypeptide E. (101 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (304 aa)
	LOC115014475	pre-mRNA-processing factor 19-like. (494 aa)
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	rbm22	RNA binding motif protein 22. (361 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	dhx34	DExH-box helicase 34. (1147 aa)
	ppie	Peptidylprolyl isomerase E. (307 aa)
	xab2	XPA binding protein 2. (829 aa)
	ppil1	Peptidylprolyl isomerase like 1. (166 aa)
	snw1	SNW domain containing 1. (588 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	cdc40	Cell division cycle 40. (645 aa)
	snrnp40	Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (838 aa)
	syf2	SYF2 pre-mRNA splicing factor. (233 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (261 aa)
	plrg1	Pleiotropic regulator 1. (512 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	LOC115025076	ATP-dependent RNA helicase DHX8. (1213 aa)
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	ENSCGOP00000051726	annotation not available (93 aa)
	ENSCGOP00000051749	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1495 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000051726	LOC115014475	ENSCGOP00000051726	ENSCGOP00000007325	annotation not available	pre-mRNA-processing factor 19-like.	0.947
ENSCGOP00000051726	LOC115025076	ENSCGOP00000051726	ENSCGOP00000050243	annotation not available	ATP-dependent RNA helicase DHX8.	0.839
ENSCGOP00000051726	aqr	ENSCGOP00000051726	ENSCGOP00000057052	annotation not available	Aquarius intron-binding spliceosomal factor.	0.900
ENSCGOP00000051726	bcas2	ENSCGOP00000051726	ENSCGOP00000019878	annotation not available	BCAS2 pre-mRNA processing factor.	0.932
ENSCGOP00000051726	cdc40	ENSCGOP00000051726	ENSCGOP00000034142	annotation not available	Cell division cycle 40.	0.938
ENSCGOP00000051726	crnkl1	ENSCGOP00000051726	ENSCGOP00000039064	annotation not available	Crooked neck pre-mRNA splicing factor 1.	0.935
ENSCGOP00000051726	cwc15	ENSCGOP00000051726	ENSCGOP00000041548	annotation not available	CWC15 spliceosome associated protein homolog.	0.930
ENSCGOP00000051726	cwc22	ENSCGOP00000051726	ENSCGOP00000053737	annotation not available	CWC22 spliceosome associated protein homolog.	0.877
ENSCGOP00000051726	dhx34	ENSCGOP00000051726	ENSCGOP00000024213	annotation not available	DExH-box helicase 34.	0.839
ENSCGOP00000051726	eftud2	ENSCGOP00000051726	ENSCGOP00000049983	annotation not available	Elongation factor Tu GTP binding domain containing 2.	0.981
ENSCGOP00000051726	plrg1	ENSCGOP00000051726	ENSCGOP00000042025	annotation not available	Pleiotropic regulator 1.	0.906
ENSCGOP00000051726	ppie	ENSCGOP00000051726	ENSCGOP00000026922	annotation not available	Peptidylprolyl isomerase E.	0.871
ENSCGOP00000051726	ppil1	ENSCGOP00000051726	ENSCGOP00000031938	annotation not available	Peptidylprolyl isomerase like 1.	0.928
ENSCGOP00000051726	prpf8	ENSCGOP00000051726	ENSCGOP00000016018	annotation not available	pre-mRNA processing factor 8.	0.979
ENSCGOP00000051726	rbm22	ENSCGOP00000051726	ENSCGOP00000016098	annotation not available	RNA binding motif protein 22.	0.913
ENSCGOP00000051726	snrnp40	ENSCGOP00000051726	ENSCGOP00000038247	annotation not available	Small nuclear ribonucleoprotein U5 subunit 40.	0.970
ENSCGOP00000051726	snrpa1	ENSCGOP00000051726	ENSCGOP00000001157	annotation not available	Small nuclear ribonucleoprotein polypeptide A.	0.979
ENSCGOP00000051726	snrpd1	ENSCGOP00000051726	ENSCGOP00000054741	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.998
ENSCGOP00000051726	snrpd2	ENSCGOP00000051726	ENSCGOP00000033977	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.998
ENSCGOP00000051726	snrpd3	ENSCGOP00000051726	ENSCGOP00000050914	annotation not available	Small nuclear ribonucleoprotein D3 polypeptide.	0.998