(63 nodes) Catalytic step 2 spliceosome network (Cottoperca gobio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (147 aa)
	ppie	Peptidylprolyl isomerase E. (307 aa)
	hnrnpm	Heterogeneous nuclear ribonucleoprotein M. (665 aa)
	xab2	XPA binding protein 2. (829 aa)
	pnn	Pinin, desmosome associated protein. (691 aa)
	ppil1	Peptidylprolyl isomerase like 1. (166 aa)
	snw1	SNW domain containing 1. (588 aa)
	ENSCGOP00000032881	annotation not available (534 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	cdc40	Cell division cycle 40. (645 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (490 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat containing 1. (628 aa)
	LOC115028947	Heterogeneous nuclear ribonucleoprotein Q. (678 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (774 aa)
	sf3b6	Splicing factor 3b subunit 6. (125 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	snrnp40	Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (838 aa)
	srrm1	Serine and arginine repetitive matrix 1. (859 aa)
	syf2	SYF2 pre-mRNA splicing factor. (233 aa)
	WDR25	WD repeat domain 25. (514 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (261 aa)
	sf3b2	Splicing factor 3b subunit 2. (839 aa)
	plrg1	Pleiotropic regulator 1. (512 aa)
	lsm2	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated. (156 aa)
	zcchc8	Zinc finger CCHC-type containing 8. (736 aa)
	prpf6	pre-mRNA processing factor 6. (1018 aa)
	snrpg	Small nuclear ribonucleoprotein polypeptide G. (76 aa)
	dhx35	DEAH-box helicase 35. (700 aa)
	ess2	Ess-2 splicing factor homolog. (466 aa)
	lsm3	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (102 aa)
	rbmx	RNA binding motif protein X-linked. (408 aa)
	wdr83	WD repeat domain 83. (328 aa)
	LOC115027196	Heterogeneous nuclear ribonucleoprotein Q-like. (602 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	LOC115025076	ATP-dependent RNA helicase DHX8. (1213 aa)
	dhx38	DEAH-box helicase 38. (1249 aa)
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	ENSCGOP00000051726	annotation not available (93 aa)
	ENSCGOP00000051749	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	LOC115025619	Serine/threonine-protein kinase PRP4 homolog. (853 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)
	ppil2	Peptidylprolyl isomerase like 2. (525 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1495 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (304 aa)
	DDX41	DEAD-box helicase 41. (620 aa)
	LOC115014475	pre-mRNA-processing factor 19-like. (494 aa)
	sf3b1	Splicing factor 3b subunit 1. (1317 aa)
	ppil3	Peptidylprolyl isomerase like 3. (161 aa)
	sf3a3	Splicing factor 3a subunit 3. (513 aa)
	sf3a1	Splicing factor 3a subunit 1. (749 aa)
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	rbm22	RNA binding motif protein 22. (361 aa)
	ENSCGOP00000016326	annotation not available (212 aa)
	mtrex	Mtr4 exosome RNA helicase. (1036 aa)
	ddx23	DEAD-box helicase 23. (798 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	c13h19orf54	Chromosome 13 C19orf54 homolog. (309 aa)
	snrpe	Small nuclear ribonucleoprotein polypeptide E. (101 aa)
	dhx34	DExH-box helicase 34. (1147 aa)
	LOC115015412	Heterogeneous nuclear ribonucleoprotein R-like. (621 aa)
	sf3a2	Splicing factor 3a subunit 2. (293 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	LOC115025076	ENSCGOP00000002779	ENSCGOP00000050243	DEAD-box helicase 41.	ATP-dependent RNA helicase DHX8.	0.781
DDX41	WDR25	ENSCGOP00000002779	ENSCGOP00000039326	DEAD-box helicase 41.	WD repeat domain 25.	0.717
DDX41	cdc40	ENSCGOP00000002779	ENSCGOP00000034142	DEAD-box helicase 41.	Cell division cycle 40.	0.745
DDX41	cwc22	ENSCGOP00000002779	ENSCGOP00000053737	DEAD-box helicase 41.	CWC22 spliceosome associated protein homolog.	0.753
DDX41	cwc27	ENSCGOP00000002779	ENSCGOP00000034277	DEAD-box helicase 41.	CWC27 spliceosome associated cyclophilin.	0.481
DDX41	ddx23	ENSCGOP00000002779	ENSCGOP00000018564	DEAD-box helicase 41.	DEAD-box helicase 23.	0.643
DDX41	dhx34	ENSCGOP00000002779	ENSCGOP00000024213	DEAD-box helicase 41.	DExH-box helicase 34.	0.781
DDX41	dhx35	ENSCGOP00000002779	ENSCGOP00000046757	DEAD-box helicase 41.	DEAH-box helicase 35.	0.776
DDX41	dhx38	ENSCGOP00000002779	ENSCGOP00000050649	DEAD-box helicase 41.	DEAH-box helicase 38.	0.787
DDX41	mtrex	ENSCGOP00000002779	ENSCGOP00000018420	DEAD-box helicase 41.	Mtr4 exosome RNA helicase.	0.756
DDX41	pnn	ENSCGOP00000002779	ENSCGOP00000030588	DEAD-box helicase 41.	Pinin, desmosome associated protein.	0.448
DDX41	ppie	ENSCGOP00000002779	ENSCGOP00000026922	DEAD-box helicase 41.	Peptidylprolyl isomerase E.	0.590
DDX41	ppil1	ENSCGOP00000002779	ENSCGOP00000031938	DEAD-box helicase 41.	Peptidylprolyl isomerase like 1.	0.709
DDX41	ppil2	ENSCGOP00000002779	ENSCGOP00000056530	DEAD-box helicase 41.	Peptidylprolyl isomerase like 2.	0.649
DDX41	ppil3	ENSCGOP00000002779	ENSCGOP00000007728	DEAD-box helicase 41.	Peptidylprolyl isomerase like 3.	0.691
DDX41	ppwd1	ENSCGOP00000002779	ENSCGOP00000034595	DEAD-box helicase 41.	Peptidylprolyl isomerase domain and WD repeat containing 1.	0.876
DDX41	srrm1	ENSCGOP00000002779	ENSCGOP00000039106	DEAD-box helicase 41.	Serine and arginine repetitive matrix 1.	0.745
ENSCGOP00000016326	ENSCGOP00000051726	ENSCGOP00000016326	ENSCGOP00000051726	annotation not available	annotation not available	0.918
ENSCGOP00000016326	ENSCGOP00000051749	ENSCGOP00000016326	ENSCGOP00000051749	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.918
ENSCGOP00000016326	LOC115014475	ENSCGOP00000016326	ENSCGOP00000007325	annotation not available	pre-mRNA-processing factor 19-like.	0.888