11 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd3	Small nuclear ribonucleoprotein D3 polypeptide. (127 aa)
	txnl4a	Thioredoxin like 4A. (194 aa)
	cd2bp2	CD2 cytoplasmic tail binding protein 2. (384 aa)
	prpf8	pre-mRNA processing factor 8. (2332 aa)
	ddx23	DEAD-box helicase 23. (798 aa)
	prpf18	pre-mRNA processing factor 18. (350 aa)
	snrpd2	Small nuclear ribonucleoprotein D2 polypeptide. (118 aa)
	txnl4b	Thioredoxin like 4B. (149 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	snrpg	Small nuclear ribonucleoprotein polypeptide G. (76 aa)
	snrpd1	Small nuclear ribonucleoprotein D1 polypeptide. (130 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cd2bp2	ddx23	ENSCGOP00000010409	ENSCGOP00000018564	CD2 cytoplasmic tail binding protein 2.	DEAD-box helicase 23.	0.956
cd2bp2	prpf8	ENSCGOP00000010409	ENSCGOP00000016018	CD2 cytoplasmic tail binding protein 2.	pre-mRNA processing factor 8.	0.962
cd2bp2	snrnp200	ENSCGOP00000010409	ENSCGOP00000038205	CD2 cytoplasmic tail binding protein 2.	Small nuclear ribonucleoprotein U5 subunit 200.	0.993
cd2bp2	snrpd1	ENSCGOP00000010409	ENSCGOP00000054741	CD2 cytoplasmic tail binding protein 2.	Small nuclear ribonucleoprotein D1 polypeptide.	0.796
cd2bp2	snrpd2	ENSCGOP00000010409	ENSCGOP00000033977	CD2 cytoplasmic tail binding protein 2.	Small nuclear ribonucleoprotein D2 polypeptide.	0.754
cd2bp2	snrpd3	ENSCGOP00000010409	ENSCGOP00000050914	CD2 cytoplasmic tail binding protein 2.	Small nuclear ribonucleoprotein D3 polypeptide.	0.485
cd2bp2	snrpg	ENSCGOP00000010409	ENSCGOP00000045929	CD2 cytoplasmic tail binding protein 2.	Small nuclear ribonucleoprotein polypeptide G.	0.534
cd2bp2	txnl4a	ENSCGOP00000010409	ENSCGOP00000005690	CD2 cytoplasmic tail binding protein 2.	Thioredoxin like 4A.	0.965
cd2bp2	txnl4b	ENSCGOP00000010409	ENSCGOP00000036840	CD2 cytoplasmic tail binding protein 2.	Thioredoxin like 4B.	0.910
ddx23	cd2bp2	ENSCGOP00000018564	ENSCGOP00000010409	DEAD-box helicase 23.	CD2 cytoplasmic tail binding protein 2.	0.956
ddx23	prpf18	ENSCGOP00000018564	ENSCGOP00000032948	DEAD-box helicase 23.	pre-mRNA processing factor 18.	0.703
ddx23	prpf8	ENSCGOP00000018564	ENSCGOP00000016018	DEAD-box helicase 23.	pre-mRNA processing factor 8.	0.999
ddx23	snrnp200	ENSCGOP00000018564	ENSCGOP00000038205	DEAD-box helicase 23.	Small nuclear ribonucleoprotein U5 subunit 200.	0.992
ddx23	snrpd1	ENSCGOP00000018564	ENSCGOP00000054741	DEAD-box helicase 23.	Small nuclear ribonucleoprotein D1 polypeptide.	0.988
ddx23	snrpd2	ENSCGOP00000018564	ENSCGOP00000033977	DEAD-box helicase 23.	Small nuclear ribonucleoprotein D2 polypeptide.	0.990
ddx23	snrpd3	ENSCGOP00000018564	ENSCGOP00000050914	DEAD-box helicase 23.	Small nuclear ribonucleoprotein D3 polypeptide.	0.987
ddx23	snrpg	ENSCGOP00000018564	ENSCGOP00000045929	DEAD-box helicase 23.	Small nuclear ribonucleoprotein polypeptide G.	0.988
ddx23	txnl4a	ENSCGOP00000018564	ENSCGOP00000005690	DEAD-box helicase 23.	Thioredoxin like 4A.	0.998
ddx23	txnl4b	ENSCGOP00000018564	ENSCGOP00000036840	DEAD-box helicase 23.	Thioredoxin like 4B.	0.967
prpf18	ddx23	ENSCGOP00000032948	ENSCGOP00000018564	pre-mRNA processing factor 18.	DEAD-box helicase 23.	0.703