7 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3. (425 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (402 aa)
	LOC115027479	SH2 domain-containing adapter protein F-like. (407 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	rbm22	RNA binding motif protein 22. (361 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC115027479	cwc22	ENSCGOP00000055241	ENSCGOP00000053737	SH2 domain-containing adapter protein F-like.	CWC22 spliceosome associated protein homolog.	0.980
LOC115027479	cwc25	ENSCGOP00000055241	ENSCGOP00000023303	SH2 domain-containing adapter protein F-like.	CWC25 spliceosome associated protein homolog.	0.996
LOC115027479	eif4a3	ENSCGOP00000055241	ENSCGOP00000051634	SH2 domain-containing adapter protein F-like.	Eukaryotic translation initiation factor 4A3.	0.785
LOC115027479	rbm22	ENSCGOP00000055241	ENSCGOP00000016098	SH2 domain-containing adapter protein F-like.	RNA binding motif protein 22.	0.764
LOC115027479	snrnp200	ENSCGOP00000055241	ENSCGOP00000038205	SH2 domain-containing adapter protein F-like.	Small nuclear ribonucleoprotein U5 subunit 200.	0.940
cwc22	LOC115027479	ENSCGOP00000053737	ENSCGOP00000055241	CWC22 spliceosome associated protein homolog.	SH2 domain-containing adapter protein F-like.	0.980
cwc22	cwc25	ENSCGOP00000053737	ENSCGOP00000023303	CWC22 spliceosome associated protein homolog.	CWC25 spliceosome associated protein homolog.	0.991
cwc22	eif4a3	ENSCGOP00000053737	ENSCGOP00000051634	CWC22 spliceosome associated protein homolog.	Eukaryotic translation initiation factor 4A3.	0.998
cwc22	rbm22	ENSCGOP00000053737	ENSCGOP00000016098	CWC22 spliceosome associated protein homolog.	RNA binding motif protein 22.	0.961
cwc22	snrnp200	ENSCGOP00000053737	ENSCGOP00000038205	CWC22 spliceosome associated protein homolog.	Small nuclear ribonucleoprotein U5 subunit 200.	0.995
cwc22	yju2	ENSCGOP00000053737	ENSCGOP00000055239	CWC22 spliceosome associated protein homolog.	YJU2 splicing factor homolog.	0.993
cwc25	LOC115027479	ENSCGOP00000023303	ENSCGOP00000055241	CWC25 spliceosome associated protein homolog.	SH2 domain-containing adapter protein F-like.	0.996
cwc25	cwc22	ENSCGOP00000023303	ENSCGOP00000053737	CWC25 spliceosome associated protein homolog.	CWC22 spliceosome associated protein homolog.	0.991
cwc25	eif4a3	ENSCGOP00000023303	ENSCGOP00000051634	CWC25 spliceosome associated protein homolog.	Eukaryotic translation initiation factor 4A3.	0.856
cwc25	rbm22	ENSCGOP00000023303	ENSCGOP00000016098	CWC25 spliceosome associated protein homolog.	RNA binding motif protein 22.	0.951
cwc25	snrnp200	ENSCGOP00000023303	ENSCGOP00000038205	CWC25 spliceosome associated protein homolog.	Small nuclear ribonucleoprotein U5 subunit 200.	0.995
cwc25	yju2	ENSCGOP00000023303	ENSCGOP00000055239	CWC25 spliceosome associated protein homolog.	YJU2 splicing factor homolog.	0.996
eif4a3	LOC115027479	ENSCGOP00000051634	ENSCGOP00000055241	Eukaryotic translation initiation factor 4A3.	SH2 domain-containing adapter protein F-like.	0.785
eif4a3	cwc22	ENSCGOP00000051634	ENSCGOP00000053737	Eukaryotic translation initiation factor 4A3.	CWC22 spliceosome associated protein homolog.	0.998
eif4a3	cwc25	ENSCGOP00000051634	ENSCGOP00000023303	Eukaryotic translation initiation factor 4A3.	CWC25 spliceosome associated protein homolog.	0.856