15 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCGOP00000034941	annotation not available (457 aa)
	snw1	SNW domain containing 1. (588 aa)
	LOC115011921	Serine/arginine repetitive matrix protein 2-like. (1244 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1495 aa)
	ENSCGOP00000034943	annotation not available (69 aa)
	snrnp40	Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (261 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (838 aa)
	sart3	Spliceosome associated factor 3, U4/U6 recycling protein. (937 aa)
	rbm22	RNA binding motif protein 22. (361 aa)
	ppie	Peptidylprolyl isomerase E. (307 aa)
	xab2	XPA binding protein 2. (829 aa)
	ppil1	Peptidylprolyl isomerase like 1. (166 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000034941	LOC115011921	ENSCGOP00000034941	ENSCGOP00000034624	annotation not available	Serine/arginine repetitive matrix protein 2-like.	0.672
ENSCGOP00000034941	aqr	ENSCGOP00000034941	ENSCGOP00000057052	annotation not available	Aquarius intron-binding spliceosomal factor.	0.850
ENSCGOP00000034941	crnkl1	ENSCGOP00000034941	ENSCGOP00000039064	annotation not available	Crooked neck pre-mRNA splicing factor 1.	0.886
ENSCGOP00000034941	cwc15	ENSCGOP00000034941	ENSCGOP00000041548	annotation not available	CWC15 spliceosome associated protein homolog.	0.866
ENSCGOP00000034941	cwc22	ENSCGOP00000034941	ENSCGOP00000053737	annotation not available	CWC22 spliceosome associated protein homolog.	0.867
ENSCGOP00000034941	ppie	ENSCGOP00000034941	ENSCGOP00000026922	annotation not available	Peptidylprolyl isomerase E.	0.465
ENSCGOP00000034941	ppil1	ENSCGOP00000034941	ENSCGOP00000031938	annotation not available	Peptidylprolyl isomerase like 1.	0.465
ENSCGOP00000034941	rbm22	ENSCGOP00000034941	ENSCGOP00000016098	annotation not available	RNA binding motif protein 22.	0.678
ENSCGOP00000034941	sart3	ENSCGOP00000034941	ENSCGOP00000011825	annotation not available	Spliceosome associated factor 3, U4/U6 recycling protein.	0.503
ENSCGOP00000034941	snrnp40	ENSCGOP00000034941	ENSCGOP00000038247	annotation not available	Small nuclear ribonucleoprotein U5 subunit 40.	0.946
ENSCGOP00000034941	snw1	ENSCGOP00000034941	ENSCGOP00000031974	annotation not available	SNW domain containing 1.	0.875
ENSCGOP00000034941	xab2	ENSCGOP00000034941	ENSCGOP00000028536	annotation not available	XPA binding protein 2.	0.883
ENSCGOP00000034943	LOC115011921	ENSCGOP00000034943	ENSCGOP00000034624	annotation not available	Serine/arginine repetitive matrix protein 2-like.	0.672
ENSCGOP00000034943	aqr	ENSCGOP00000034943	ENSCGOP00000057052	annotation not available	Aquarius intron-binding spliceosomal factor.	0.850
ENSCGOP00000034943	crnkl1	ENSCGOP00000034943	ENSCGOP00000039064	annotation not available	Crooked neck pre-mRNA splicing factor 1.	0.886
ENSCGOP00000034943	cwc15	ENSCGOP00000034943	ENSCGOP00000041548	annotation not available	CWC15 spliceosome associated protein homolog.	0.866
ENSCGOP00000034943	cwc22	ENSCGOP00000034943	ENSCGOP00000053737	annotation not available	CWC22 spliceosome associated protein homolog.	0.867
ENSCGOP00000034943	ppie	ENSCGOP00000034943	ENSCGOP00000026922	annotation not available	Peptidylprolyl isomerase E.	0.465
ENSCGOP00000034943	ppil1	ENSCGOP00000034943	ENSCGOP00000031938	annotation not available	Peptidylprolyl isomerase like 1.	0.465
ENSCGOP00000034943	rbm22	ENSCGOP00000034943	ENSCGOP00000016098	annotation not available	RNA binding motif protein 22.	0.678