(34 nodes) Catalytic step 2 spliceosome network (Cottoperca gobio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC115011921	Serine/arginine repetitive matrix protein 2-like. (1244 aa)
	DDX41	DEAD-box helicase 41. (620 aa)
	ppil3	Peptidylprolyl isomerase like 3. (161 aa)
	sart3	Spliceosome associated factor 3, U4/U6 recycling protein. (937 aa)
	rbm22	RNA binding motif protein 22. (361 aa)
	mtrex	Mtr4 exosome RNA helicase. (1036 aa)
	ddx23	DEAD-box helicase 23. (798 aa)
	ppie	Peptidylprolyl isomerase E. (307 aa)
	xab2	XPA binding protein 2. (829 aa)
	ppil1	Peptidylprolyl isomerase like 1. (166 aa)
	snw1	SNW domain containing 1. (588 aa)
	cdc40	Cell division cycle 40. (645 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat containing 1. (628 aa)
	ENSCGOP00000034941	annotation not available (457 aa)
	ENSCGOP00000034943	annotation not available (69 aa)
	LOC115022031	Cactin-like. (794 aa)
	snrnp200	Small nuclear ribonucleoprotein U5 subunit 200. (2126 aa)
	snrnp40	Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (838 aa)
	srrm1	Serine and arginine repetitive matrix 1. (859 aa)
	WDR25	WD repeat domain 25. (514 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (261 aa)
	mthfsd	Methenyltetrahydrofolate synthetase domain containing. (476 aa)
	dhx35	DEAH-box helicase 35. (700 aa)
	ess2	Ess-2 splicing factor homolog. (466 aa)
	rbmx	RNA binding motif protein X-linked. (408 aa)
	wdr83	WD repeat domain 83. (328 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	dhx38	DEAH-box helicase 38. (1249 aa)
	LOC115023575	Heterogeneous nuclear ribonucleoprotein C-like. (318 aa)
	LOC115025619	Serine/threonine-protein kinase PRP4 homolog. (853 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1037 aa)
	LOC115022234	Heterogeneous nuclear ribonucleoprotein C-like. (319 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1495 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	WDR25	ENSCGOP00000002779	ENSCGOP00000039326	DEAD-box helicase 41.	WD repeat domain 25.	0.717
DDX41	cdc40	ENSCGOP00000002779	ENSCGOP00000034142	DEAD-box helicase 41.	Cell division cycle 40.	0.745
DDX41	cwc22	ENSCGOP00000002779	ENSCGOP00000053737	DEAD-box helicase 41.	CWC22 spliceosome associated protein homolog.	0.753
DDX41	ddx23	ENSCGOP00000002779	ENSCGOP00000018564	DEAD-box helicase 41.	DEAD-box helicase 23.	0.643
DDX41	dhx35	ENSCGOP00000002779	ENSCGOP00000046757	DEAD-box helicase 41.	DEAH-box helicase 35.	0.776
DDX41	dhx38	ENSCGOP00000002779	ENSCGOP00000050649	DEAD-box helicase 41.	DEAH-box helicase 38.	0.787
DDX41	mtrex	ENSCGOP00000002779	ENSCGOP00000018420	DEAD-box helicase 41.	Mtr4 exosome RNA helicase.	0.756
DDX41	ppie	ENSCGOP00000002779	ENSCGOP00000026922	DEAD-box helicase 41.	Peptidylprolyl isomerase E.	0.590
DDX41	ppil1	ENSCGOP00000002779	ENSCGOP00000031938	DEAD-box helicase 41.	Peptidylprolyl isomerase like 1.	0.709
DDX41	ppil3	ENSCGOP00000002779	ENSCGOP00000007728	DEAD-box helicase 41.	Peptidylprolyl isomerase like 3.	0.691
DDX41	ppwd1	ENSCGOP00000002779	ENSCGOP00000034595	DEAD-box helicase 41.	Peptidylprolyl isomerase domain and WD repeat containing 1.	0.876
DDX41	srrm1	ENSCGOP00000002779	ENSCGOP00000039106	DEAD-box helicase 41.	Serine and arginine repetitive matrix 1.	0.745
ENSCGOP00000034941	LOC115011921	ENSCGOP00000034941	ENSCGOP00000034624	annotation not available	Serine/arginine repetitive matrix protein 2-like.	0.672
ENSCGOP00000034941	LOC115025619	ENSCGOP00000034941	ENSCGOP00000053022	annotation not available	Serine/threonine-protein kinase PRP4 homolog.	0.669
ENSCGOP00000034941	WDR25	ENSCGOP00000034941	ENSCGOP00000039326	annotation not available	WD repeat domain 25.	0.769
ENSCGOP00000034941	aqr	ENSCGOP00000034941	ENSCGOP00000057052	annotation not available	Aquarius intron-binding spliceosomal factor.	0.850
ENSCGOP00000034941	cdc40	ENSCGOP00000034941	ENSCGOP00000034142	annotation not available	Cell division cycle 40.	0.769
ENSCGOP00000034941	crnkl1	ENSCGOP00000034941	ENSCGOP00000039064	annotation not available	Crooked neck pre-mRNA splicing factor 1.	0.886
ENSCGOP00000034941	cwc15	ENSCGOP00000034941	ENSCGOP00000041548	annotation not available	CWC15 spliceosome associated protein homolog.	0.866
ENSCGOP00000034941	cwc22	ENSCGOP00000034941	ENSCGOP00000053737	annotation not available	CWC22 spliceosome associated protein homolog.	0.867