69 items (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	thoc7	THO complex 7. (203 aa)
	nup42	Nucleoporin 42. (430 aa)
	aaas	Aladin WD repeat nucleoporin. (537 aa)
	tpr	Translocated promoter region, nuclear basket protein. (2186 aa)
	nup98	Nucleoporin 98. (1840 aa)
	magoh	Mago homolog, exon junction complex subunit. (147 aa)
	LOC115006126	Serine/arginine-rich splicing factor 2-like. (278 aa)
	slu7	SLU7 homolog, splicing factor. (600 aa)
	nup58	Nucleoporin 58. (564 aa)
	nup153	Nucleoporin 153. (1511 aa)
	rbm8a	RNA binding motif protein 8A. (175 aa)
	srsf7	Serine and arginine rich splicing factor 7. (278 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (169 aa)
	ddx39a	DExD-box helicase 39A. (429 aa)
	NUP54	Nucleoporin 54. (537 aa)
	poldip3	DNA polymerase delta interacting protein 3. (452 aa)
	nup93	Nucleoporin 93. (820 aa)
	ENSCGOP00000018471	RAN binding protein 2. (1517 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup35	Nucleoporin 35. (338 aa)
	gle1	GLE1 RNA export mediator. (720 aa)
	thoc3	THO complex 3. (322 aa)
	rnps1	RNA binding protein with serine rich domain 1. (299 aa)
	LOC115008047	THO complex subunit 4-like. (264 aa)
	ENSCGOP00000023428	annotation not available (228 aa)
	ncbp2	Nuclear cap binding protein subunit 2. (149 aa)
	nup88	Nucleoporin 88. (719 aa)
	nup85	Nucleoporin 85. (662 aa)
	nup188	Nucleoporin 188. (1733 aa)
	nup155	Nucleoporin 155. (1367 aa)
	nup205	Nucleoporin 205. (1990 aa)
	thoc2	THO complex 2. (1579 aa)
	nxf1	Nuclear RNA export factor 1. (632 aa)
	LOC115008076	Serine/arginine-rich splicing factor 3-like. (160 aa)
	LOC115006254	Nuclear pore complex protein Nup133-like. (1154 aa)
	thoc5	THO complex 5. (692 aa)
	alyref	Aly/REF export factor. (308 aa)
	NUP62	Nucleoporin 62. (583 aa)
	casc3	CASC3 exon junction complex subunit. (775 aa)
	cdc40	Cell division cycle 40. (645 aa)
	LOC115024967	Serine/arginine-rich splicing factor 2-like. (219 aa)
	LOC115018679	Serine/arginine-rich splicing factor 1-like. (246 aa)
	upf3b	UPF3B regulator of nonsense mediated mRNA decay. (515 aa)
	chtop	Chromatin target of PRMT1. (245 aa)
	sarnp	SAP domain containing ribonucleoprotein. (222 aa)
	LOC115003510	Serine/arginine-rich splicing factor 5-like. (296 aa)
	NUP133	Nuclear pore complex protein Nup133-like. (1153 aa)
	srrm1	Serine and arginine repetitive matrix 1. (859 aa)
	ndc1	NDC1 transmembrane nucleoporin. (671 aa)
	LOC115022077	Serine/arginine-rich splicing factor 11-like. (450 aa)
	seh1l	SEH1 like nucleoporin. (387 aa)
	pom121c	POM121 transmembrane nucleoporin C. (1303 aa)
	LOC115005982	Nucleoporin Nup43-like. (372 aa)
	LOC115005979	Nucleoporin Nup43-like. (315 aa)
	LOC115026257	Splicing factor U2AF 35 kDa subunit. (253 aa)
	LOC115022433	Nucleoprotein TPR-like. (1940 aa)
	LOC115017028	Serine/arginine-rich splicing factor 9-like. (287 aa)
	nup210	Nucleoporin 210. (1886 aa)
	srek1	Splicing regulatory glutamic acid and lysine rich protein 1. (482 aa)
	nup214	Nucleoporin 214. (1986 aa)
	LOC115018430	Splicing factor U2AF 35 kDa subunit-like. (228 aa)
	nup37	Nucleoporin 37. (325 aa)
	dhx38	DEAH-box helicase 38. (1249 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3. (425 aa)
	srsf11	Serine and arginine rich splicing factor 11. (462 aa)
	thoc1	THO complex 1. (649 aa)
	nxt2	Nuclear transport factor 2 like export factor 2. (144 aa)
	srsf1	Serine and arginine rich splicing factor 1. (245 aa)
	DDX39A	ATP-dependent RNA helicase DDX39A-like. (462 aa)

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX39A	ENSCGOP00000018471	ENSCGOP00000054152	ENSCGOP00000018471	ATP-dependent RNA helicase DDX39A-like.	RAN binding protein 2.	0.662
DDX39A	ENSCGOP00000023428	ENSCGOP00000054152	ENSCGOP00000023428	ATP-dependent RNA helicase DDX39A-like.	annotation not available	0.459
DDX39A	LOC115003510	ENSCGOP00000054152	ENSCGOP00000037888	ATP-dependent RNA helicase DDX39A-like.	Serine/arginine-rich splicing factor 5-like.	0.682
DDX39A	LOC115005979	ENSCGOP00000054152	ENSCGOP00000043255	ATP-dependent RNA helicase DDX39A-like.	Nucleoporin Nup43-like.	0.412
DDX39A	LOC115005982	ENSCGOP00000054152	ENSCGOP00000043201	ATP-dependent RNA helicase DDX39A-like.	Nucleoporin Nup43-like.	0.412
DDX39A	LOC115006126	ENSCGOP00000054152	ENSCGOP00000006040	ATP-dependent RNA helicase DDX39A-like.	Serine/arginine-rich splicing factor 2-like.	0.780
DDX39A	LOC115006254	ENSCGOP00000054152	ENSCGOP00000031184	ATP-dependent RNA helicase DDX39A-like.	Nuclear pore complex protein Nup133-like.	0.476
DDX39A	LOC115008047	ENSCGOP00000054152	ENSCGOP00000022985	ATP-dependent RNA helicase DDX39A-like.	THO complex subunit 4-like.	0.989
DDX39A	LOC115008076	ENSCGOP00000054152	ENSCGOP00000029649	ATP-dependent RNA helicase DDX39A-like.	Serine/arginine-rich splicing factor 3-like.	0.808
DDX39A	LOC115017028	ENSCGOP00000054152	ENSCGOP00000045350	ATP-dependent RNA helicase DDX39A-like.	Serine/arginine-rich splicing factor 9-like.	0.769
DDX39A	LOC115018430	ENSCGOP00000054152	ENSCGOP00000046880	ATP-dependent RNA helicase DDX39A-like.	Splicing factor U2AF 35 kDa subunit-like.	0.671
DDX39A	LOC115018679	ENSCGOP00000054152	ENSCGOP00000035388	ATP-dependent RNA helicase DDX39A-like.	Serine/arginine-rich splicing factor 1-like.	0.806
DDX39A	LOC115022077	ENSCGOP00000054152	ENSCGOP00000040203	ATP-dependent RNA helicase DDX39A-like.	Serine/arginine-rich splicing factor 11-like.	0.684
DDX39A	LOC115022433	ENSCGOP00000054152	ENSCGOP00000044628	ATP-dependent RNA helicase DDX39A-like.	Nucleoprotein TPR-like.	0.517
DDX39A	LOC115024967	ENSCGOP00000054152	ENSCGOP00000034535	ATP-dependent RNA helicase DDX39A-like.	Serine/arginine-rich splicing factor 2-like.	0.780
DDX39A	LOC115026257	ENSCGOP00000054152	ENSCGOP00000044387	ATP-dependent RNA helicase DDX39A-like.	Splicing factor U2AF 35 kDa subunit.	0.671
DDX39A	NUP133	ENSCGOP00000054152	ENSCGOP00000038871	ATP-dependent RNA helicase DDX39A-like.	Nuclear pore complex protein Nup133-like.	0.476
DDX39A	NUP54	ENSCGOP00000054152	ENSCGOP00000014084	ATP-dependent RNA helicase DDX39A-like.	Nucleoporin 54.	0.557
DDX39A	NUP62	ENSCGOP00000054152	ENSCGOP00000033302	ATP-dependent RNA helicase DDX39A-like.	Nucleoporin 62.	0.490
DDX39A	SRSF3	ENSCGOP00000054152	ENSCGOP00000012380	ATP-dependent RNA helicase DDX39A-like.	Serine and arginine rich splicing factor 3.	0.808