STRINGSTRING
LOC115027792 LOC115027792 PABPN1L PABPN1L cstf3 cstf3 sympk sympk LOC115018430 LOC115018430 srek1 srek1 LOC115017028 LOC115017028 ENSCGOP00000045231 ENSCGOP00000045231 ENSCGOP00000045221 ENSCGOP00000045221 ENSCGOP00000044407 ENSCGOP00000044407 LOC115026257 LOC115026257 LOC115015506 LOC115015506 cstf2 cstf2 LOC115022077 LOC115022077 LOC115012484 LOC115012484 srrm1 srrm1 thoc7 thoc7 magoh magoh LOC115006126 LOC115006126 slu7 slu7 pcf11 pcf11 LOC115020079 LOC115020079 CPSF7 CPSF7 cstf1 cstf1 cpsf4 cpsf4 rbm8a rbm8a srsf7 srsf7 SRSF3 SRSF3 ddx39a ddx39a poldip3 poldip3 pabpn1 pabpn1 wdr33 wdr33 ENSCGOP00000015262 ENSCGOP00000015262 ENSCGOP00000015266 ENSCGOP00000015266 clp1 clp1 cpsf1 cpsf1 thoc3 thoc3 rnps1 rnps1 ncbp2 ncbp2 thoc2 thoc2 LOC115003692 LOC115003692 LOC115008076 LOC115008076 thoc5 thoc5 u2af2 u2af2 alyref alyref casc3 casc3 cdc40 cdc40 LOC115024967 LOC115024967 LOC115003510 LOC115003510 LOC115018679 LOC115018679 upf3b upf3b chtop chtop sarnp sarnp nudt21 nudt21 CPSF3 CPSF3 DDX39A DDX39A srsf1 srsf1 thoc1 thoc1 srsf11 srsf11 eif4a3 eif4a3 cpsf6 cpsf6 dhx38 dhx38
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC115027792Serine/arginine-rich splicing factor 5-like. (360 aa)
PABPN1LPABPN1 like, cytoplasmic. (264 aa)
cstf3Cleavage stimulation factor subunit 3. (705 aa)
sympkSymplekin. (1235 aa)
LOC115018430Splicing factor U2AF 35 kDa subunit-like. (228 aa)
srek1Splicing regulatory glutamic acid and lysine rich protein 1. (482 aa)
LOC115017028Serine/arginine-rich splicing factor 9-like. (287 aa)
ENSCGOP00000045231annotation not available (164 aa)
ENSCGOP00000045221Serine and arginine rich splicing factor 4. (327 aa)
ENSCGOP00000044407annotation not available (432 aa)
LOC115026257Splicing factor U2AF 35 kDa subunit. (253 aa)
LOC115015506pre-mRNA 3'-end-processing factor FIP1-like. (553 aa)
cstf2Cleavage stimulation factor subunit 2. (521 aa)
LOC115022077Serine/arginine-rich splicing factor 11-like. (450 aa)
LOC115012484Splicing factor U2AF 65 kDa subunit-like. (466 aa)
srrm1Serine and arginine repetitive matrix 1. (859 aa)
thoc7THO complex 7. (203 aa)
magohMago homolog, exon junction complex subunit. (147 aa)
LOC115006126Serine/arginine-rich splicing factor 2-like. (278 aa)
slu7SLU7 homolog, splicing factor. (600 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1442 aa)
LOC115020079poly(A) polymerase gamma-like. (884 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (445 aa)
cstf1Cleavage stimulation factor subunit 1. (431 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (273 aa)
rbm8aRNA binding motif protein 8A. (175 aa)
srsf7Serine and arginine rich splicing factor 7. (278 aa)
SRSF3Serine and arginine rich splicing factor 3. (169 aa)
ddx39aDExD-box helicase 39A. (429 aa)
poldip3DNA polymerase delta interacting protein 3. (452 aa)
pabpn1poly(A) binding protein nuclear 1. (242 aa)
wdr33WD repeat domain 33. (254 aa)
ENSCGOP00000015262annotation not available (104 aa)
ENSCGOP00000015266Serine and arginine rich splicing factor 6a. (230 aa)
clp1Cleavage and polyadenylation factor I subunit 1. (441 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1437 aa)
thoc3THO complex 3. (322 aa)
rnps1RNA binding protein with serine rich domain 1. (299 aa)
ncbp2Nuclear cap binding protein subunit 2. (149 aa)
thoc2THO complex 2. (1579 aa)
LOC115003692poly(A) polymerase type 3-like. (388 aa)
LOC115008076Serine/arginine-rich splicing factor 3-like. (160 aa)
thoc5THO complex 5. (692 aa)
u2af2U2 small nuclear RNA auxiliary factor 2. (477 aa)
alyrefAly/REF export factor. (308 aa)
casc3CASC3 exon junction complex subunit. (775 aa)
cdc40Cell division cycle 40. (645 aa)
LOC115024967Serine/arginine-rich splicing factor 2-like. (219 aa)
LOC115003510Serine/arginine-rich splicing factor 5-like. (296 aa)
LOC115018679Serine/arginine-rich splicing factor 1-like. (246 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (515 aa)
chtopChromatin target of PRMT1. (245 aa)
sarnpSAP domain containing ribonucleoprotein. (222 aa)
nudt21Nudix hydrolase 21. (234 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)
DDX39AATP-dependent RNA helicase DDX39A-like. (462 aa)
srsf1Serine and arginine rich splicing factor 1. (245 aa)
thoc1THO complex 1. (649 aa)
srsf11Serine and arginine rich splicing factor 11. (462 aa)
eif4a3Eukaryotic translation initiation factor 4A3. (425 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (445 aa)
dhx38DEAH-box helicase 38. (1249 aa)
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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