(18 nodes) Kainate selective glutamate receptor activity, and NMDA selective glutamate receptor complex network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110002298	Glutamate receptor, ionotropic, delta 1b. (879 aa)
	LOC109995864	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b. (869 aa)
	GRIK3	Glutamate ionotropic receptor kainate type subunit 3. (885 aa)
	grin3b	Glutamate receptor, ionotropic, N-methyl-D-aspartate 3Ba; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1339 aa)
	LOC109988989	Uncharacterized protein. (1097 aa)
	LOC109988990	Glutamate ionotropic receptor kainate type subunit 5. (1078 aa)
	ENSLBEP00000016951	ANF_receptor domain-containing protein. (256 aa)
	LOC109988376	Glutamate receptor, ionotropic, kainate 1a. (912 aa)
	ENSLBEP00000019420	ANF_receptor domain-containing protein. (297 aa)
	LOC109993686	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b. (1831 aa)
	LOC109997120	Uncharacterized protein. (829 aa)
	GRIK2	Glutamate ionotropic receptor kainate type subunit 2. (911 aa)
	ENSLBEP00000026089	ANF_receptor domain-containing protein. (320 aa)
	grik4	Glutamate receptor, ionotropic, kainate 4. (933 aa)
	ENSLBEP00000028543	Uncharacterized protein. (54 aa)
	GRIN3A	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1093 aa)
	LOC109993374	Glutamate receptor, ionotropic, kainate 1b. (869 aa)
	ENSLBEP00000038424	SH3 domain-containing protein. (98 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000016951	ENSLBEP00000019420	ENSLBEP00000016951	ENSLBEP00000019420	ANF_receptor domain-containing protein.	ANF_receptor domain-containing protein.	0.571
ENSLBEP00000016951	ENSLBEP00000026089	ENSLBEP00000016951	ENSLBEP00000026089	ANF_receptor domain-containing protein.	ANF_receptor domain-containing protein.	0.582
ENSLBEP00000016951	ENSLBEP00000028543	ENSLBEP00000016951	ENSLBEP00000028543	ANF_receptor domain-containing protein.	Uncharacterized protein.	0.497
ENSLBEP00000016951	ENSLBEP00000038424	ENSLBEP00000016951	ENSLBEP00000038424	ANF_receptor domain-containing protein.	SH3 domain-containing protein.	0.497
ENSLBEP00000016951	GRIK2	ENSLBEP00000016951	ENSLBEP00000025362	ANF_receptor domain-containing protein.	Glutamate ionotropic receptor kainate type subunit 2.	0.827
ENSLBEP00000016951	GRIK3	ENSLBEP00000016951	ENSLBEP00000012053	ANF_receptor domain-containing protein.	Glutamate ionotropic receptor kainate type subunit 3.	0.827
ENSLBEP00000016951	GRIN3A	ENSLBEP00000016951	ENSLBEP00000028585	ANF_receptor domain-containing protein.	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.620
ENSLBEP00000016951	LOC109988376	ENSLBEP00000016951	ENSLBEP00000018629	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, kainate 1a.	0.827
ENSLBEP00000016951	LOC109993374	ENSLBEP00000016951	ENSLBEP00000036619	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, kainate 1b.	0.827
ENSLBEP00000016951	LOC109993686	ENSLBEP00000016951	ENSLBEP00000021573	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b.	0.582
ENSLBEP00000016951	LOC109995864	ENSLBEP00000016951	ENSLBEP00000010354	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	0.571
ENSLBEP00000016951	LOC109997120	ENSLBEP00000016951	ENSLBEP00000024685	ANF_receptor domain-containing protein.	Uncharacterized protein.	0.827
ENSLBEP00000016951	LOC110002298	ENSLBEP00000016951	ENSLBEP00000004052	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, delta 1b.	0.549
ENSLBEP00000016951	grin3b	ENSLBEP00000016951	ENSLBEP00000012157	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, N-methyl-D-aspartate 3Ba; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.583
ENSLBEP00000019420	ENSLBEP00000016951	ENSLBEP00000019420	ENSLBEP00000016951	ANF_receptor domain-containing protein.	ANF_receptor domain-containing protein.	0.571
ENSLBEP00000019420	ENSLBEP00000026089	ENSLBEP00000019420	ENSLBEP00000026089	ANF_receptor domain-containing protein.	ANF_receptor domain-containing protein.	0.920
ENSLBEP00000019420	ENSLBEP00000028543	ENSLBEP00000019420	ENSLBEP00000028543	ANF_receptor domain-containing protein.	Uncharacterized protein.	0.812
ENSLBEP00000019420	ENSLBEP00000038424	ENSLBEP00000019420	ENSLBEP00000038424	ANF_receptor domain-containing protein.	SH3 domain-containing protein.	0.812
ENSLBEP00000019420	GRIK2	ENSLBEP00000019420	ENSLBEP00000025362	ANF_receptor domain-containing protein.	Glutamate ionotropic receptor kainate type subunit 2.	0.574
ENSLBEP00000019420	GRIK3	ENSLBEP00000019420	ENSLBEP00000012053	ANF_receptor domain-containing protein.	Glutamate ionotropic receptor kainate type subunit 3.	0.574