STRINGSTRING
rchy1 rchy1 MSH2 MSH2 ENSLBEP00000000333 ENSLBEP00000000333 rfc4 rfc4 ENSLBEP00000000800 ENSLBEP00000000800 pold3 pold3 mlh3 mlh3 zdhhc16 zdhhc16 LOC109987076 LOC109987076 dmc1 dmc1 ENSLBEP00000001874 ENSLBEP00000001874 pole2 pole2 mcph1 mcph1 rmi1 rmi1 LOC109993446 LOC109993446 LOC109984746 LOC109984746 RPA1 RPA1 msh4 msh4 LOC109985360 LOC109985360 polh polh top3b top3b rfc3 rfc3 smarcal1 smarcal1 rfc1 rfc1 dhx58 dhx58 ENSLBEP00000005965 ENSLBEP00000005965 chtf18 chtf18 LOC109984795 LOC109984795 ifih1 ifih1 brca1 brca1 LOC110001535 LOC110001535 pif1 pif1 lig1 lig1 dscc1 dscc1 LOC109987772 LOC109987772 pole4 pole4 chtf8 chtf8 ENSLBEP00000009084 ENSLBEP00000009084 ENSLBEP00000009224 ENSLBEP00000009224 LOC109996043 LOC109996043 spo11 spo11 MPHOSPH9 MPHOSPH9 brip1 brip1 rfc5 rfc5 dna2 dna2 LOC109995863 LOC109995863 ENSLBEP00000011792 ENSLBEP00000011792 ENSLBEP00000011876 ENSLBEP00000011876 stn1 stn1 rad9a rad9a pms2 pms2 LOC109975730 LOC109975730 ten1 ten1 rad17 rad17 ENSLBEP00000013814 ENSLBEP00000013814 ENSLBEP00000013896 ENSLBEP00000013896 tdrd3 tdrd3 rev3l rev3l topbp1 topbp1 atm atm pole pole LOC109979207 LOC109979207 prim2 prim2 mlh1 mlh1 rfc2 rfc2 msh3 msh3 ENSLBEP00000019089 ENSLBEP00000019089 ENSLBEP00000019134 ENSLBEP00000019134 pcna pcna rtel1 rtel1 ENSLBEP00000020673 ENSLBEP00000020673 LOC109984378 LOC109984378 msh6 msh6 tp53bp1 tp53bp1 LOC109976362 LOC109976362 LOC110002533 LOC110002533 pola1 pola1 rad1 rad1 LOC110002540 LOC110002540 top3a top3a rev1 rev1 LOC109982285 LOC109982285 ENSLBEP00000024266 ENSLBEP00000024266 ENSLBEP00000024280 ENSLBEP00000024280 blm blm recql5 recql5 mad2l2 mad2l2 LOC110001857 LOC110001857 prim1 prim1 ddx11 ddx11 tp73 tp73 hus1 hus1 rpa1 rpa1 polk polk pold2 pold2 ENSLBEP00000029957 ENSLBEP00000029957 LOC109975320 LOC109975320 LOC109975370 LOC109975370 pold1 pold1 rmi2 rmi2 fbh1 fbh1 xrcc2 xrcc2 exo1 exo1 LOC110003393 LOC110003393 meiob meiob primpol primpol fen1 fen1 wdhd1 wdhd1 rad50 rad50 atrip atrip tp63 tp63 mre11 mre11 rad51 rad51 rhno1 rhno1 rad51d rad51d zdhhc15 zdhhc15 poli poli msh2 msh2 pola2 pola2 rpa2 rpa2 rpa3 rpa3 zranb3 zranb3 pms1 pms1 ENSLBEP00000037734 ENSLBEP00000037734 atr atr LOC110002098 LOC110002098
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rchy1Uncharacterized protein. (276 aa)
MSH2MutS homolog 2. (600 aa)
ENSLBEP00000000333Uncharacterized protein. (270 aa)
rfc4Replication factor C (activator 1) 4. (358 aa)
ENSLBEP00000000800Uncharacterized protein. (66 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (447 aa)
mlh3MutL_C domain-containing protein. (382 aa)
zdhhc16Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (412 aa)
LOC109987076RPA_C domain-containing protein. (257 aa)
dmc1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (332 aa)
ENSLBEP00000001874RAD9 checkpoint clamp component B. (188 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (496 aa)
mcph1Uncharacterized protein. (368 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (657 aa)
LOC109993446AAA domain-containing protein. (835 aa)
LOC109984746Tower domain-containing protein. (922 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (705 aa)
msh4MutS homolog 4. (821 aa)
LOC109985360BRCA1 associated RING domain 1. (802 aa)
polhPolymerase (DNA directed), eta. (723 aa)
top3bDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (854 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
smarcal1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (869 aa)
rfc1Replication factor C subunit 1. (1024 aa)
dhx58DEXH (Asp-Glu-X-His) box polypeptide 58. (679 aa)
ENSLBEP00000005965RFC1 domain-containing protein. (117 aa)
chtf18AAA domain-containing protein. (918 aa)
LOC109984795Ring finger and WD repeat domain 3. (715 aa)
ifih1Interferon induced with helicase C domain 1. (990 aa)
brca1Uncharacterized protein. (1180 aa)
LOC110001535CBFD_NFYB_HMF domain-containing protein. (153 aa)
pif1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (614 aa)
lig1DNA ligase. (767 aa)
dscc1DNA replication and sister chromatid cohesion 1. (368 aa)
LOC109987772SCY domain-containing protein. (126 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
chtf8CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (137 aa)
ENSLBEP00000009084Uncharacterized protein. (88 aa)
ENSLBEP00000009224MutS homolog 5. (518 aa)
LOC109996043Zgc:110269. (347 aa)
spo11SPO11 initiator of meiotic double stranded breaks. (390 aa)
MPHOSPH9M-phase phosphoprotein 9. (959 aa)
brip1BRCA1 interacting protein C-terminal helicase 1. (1553 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
dna2DNA replication helicase/nuclease 2. (1384 aa)
LOC109995863Uncharacterized protein. (555 aa)
ENSLBEP00000011792Uncharacterized protein. (142 aa)
ENSLBEP00000011876Uncharacterized protein. (726 aa)
stn1CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (365 aa)
rad9aRAD9 checkpoint clamp component A. (372 aa)
pms2PMS1 homolog 2, mismatch repair system component. (852 aa)
LOC109975730RECA_2 domain-containing protein. (340 aa)
ten1TEN1 subunit of CST complex. (134 aa)
rad17RAD17 checkpoint clamp loader component. (618 aa)
ENSLBEP00000013814FHA domain-containing protein. (1364 aa)
ENSLBEP00000013896Uncharacterized protein. (586 aa)
tdrd3Tudor domain containing 3. (751 aa)
rev3lREV3 like, DNA directed polymerase zeta catalytic subunit. (2789 aa)
topbp1DNA topoisomerase II binding protein 1. (1444 aa)
atmNon-specific serine/threonine protein kinase. (3019 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2259 aa)
LOC109979207DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1148 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (495 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (648 aa)
rfc2Replication factor C (activator 1) 2. (233 aa)
msh3MutS homolog 3 (E. coli); Component of the post-replicative DNA mismatch repair system (MMR). (1024 aa)
ENSLBEP00000019089Uncharacterized protein. (202 aa)
ENSLBEP00000019134Chromo_2 domain-containing protein. (634 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
rtel1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1179 aa)
ENSLBEP00000020673RecQ helicase-like 4. (781 aa)
LOC109984378Cell division cycle associated 7a. (367 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1382 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1256 aa)
LOC109976362RAD51 paralog C. (342 aa)
LOC110002533RECA_2 domain-containing protein. (354 aa)
pola1DNA polymerase. (1476 aa)
rad1RAD1 homolog (S. pombe). (279 aa)
LOC110002540BRCT domain-containing protein. (636 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1018 aa)
rev1REV1 DNA directed polymerase. (1385 aa)
LOC109982285Si:dkey-24l11.2. (620 aa)
ENSLBEP00000024266Uncharacterized protein. (200 aa)
ENSLBEP00000024280ANK_REP_REGION domain-containing protein. (346 aa)
blmATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (846 aa)
recql5RecQ helicase-like 5. (430 aa)
mad2l2Mitotic arrest deficient 2 like 2. (210 aa)
LOC110001857ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (954 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (426 aa)
ddx11DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11. (910 aa)
tp73Tumor protein p73; Participates in the apoptotic response to DNA damage. Isoforms containing the transactivation domain are pro-apoptotic, isoforms lacking the domain are anti-apoptotic and block the function of p53 and transactivating p73 isoforms. May be a tumor suppressor protein. (652 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (605 aa)
polkPolymerase (DNA directed) kappa. (395 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
ENSLBEP00000029957RING-type domain-containing protein. (504 aa)
LOC109975320SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (766 aa)
LOC109975370Uncharacterized protein. (330 aa)
pold1DNA polymerase. (1126 aa)
rmi2RecQ mediated genome instability 2. (144 aa)
fbh1F-box DNA helicase 1. (1069 aa)
xrcc2RECA_2 domain-containing protein. (304 aa)
exo1Exonuclease 1. (793 aa)
LOC110003393DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (334 aa)
meiobMethionine sulfoxide reductase B1b. (438 aa)
primpolPrimase and polymerase (DNA-directed). (539 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
wdhd1WD repeat and HMG-box DNA binding protein 1. (1135 aa)
rad50RAD50 homolog, double strand break repair protein. (1284 aa)
atripUncharacterized protein. (832 aa)
tp63Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (631 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (641 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (338 aa)
rhno1Si:ch73-352p4.5. (279 aa)
rad51dRAD51 paralog D. (334 aa)
zdhhc15Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (313 aa)
poliPolymerase (DNA directed) iota. (684 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (935 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (600 aa)
rpa2Replication protein A2. (274 aa)
rpa3Replication protein A3. (122 aa)
zranb3Zinc finger, RAN-binding domain containing 3. (1192 aa)
pms1PMS1 homolog 1, mismatch repair system component. (1093 aa)
ENSLBEP00000037734SAE2 domain-containing protein. (93 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2437 aa)
LOC110002098Exonuclease 3'-5' domain containing 2. (633 aa)
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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