(17 nodes) Mostly uncharacterized, incl. Shieldin complex subunit 3, and Chondroitin sulfate proteoglycan 5 network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	shld2	Si:ch211-134m17.9. (759 aa)
	LOC109982419	Neural_ProG_Cyt domain-containing protein. (654 aa)
	LOC109996803	Si:ch211-1e14.1. (1770 aa)
	LOC110000372	G_PROTEIN_RECEP_F1_2 domain-containing protein. (346 aa)
	ENSLBEP00000005157	C2 domain-containing protein. (134 aa)
	LOC109991206	Perforin 1.5. (523 aa)
	LOC109977677	Uncharacterized protein. (277 aa)
	palm	Paralemmin 1b. (229 aa)
	tmem200c	Uncharacterized protein. (452 aa)
	LOC109986800	Zinc finger protein 668. (667 aa)
	LOC110003061	Family with sequence similarity 131 member Ba. (470 aa)
	hepacam2	HEPACAM family member 2. (461 aa)
	gper1	G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family. (366 aa)
	LOC109997333	Si:ch211-285f17.1. (1491 aa)
	LOC109990953	Uncharacterized protein. (277 aa)
	zbtb33	Zinc finger and BTB domain containing 33. (619 aa)
	golga1	Golgin A1. (838 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000005157	LOC109991206	ENSLBEP00000005157	ENSLBEP00000010545	C2 domain-containing protein.	Perforin 1.5.	0.831
LOC109977677	shld2	ENSLBEP00000011665	ENSLBEP00000000086	Uncharacterized protein.	Si:ch211-134m17.9.	0.934
LOC109990953	shld2	ENSLBEP00000035546	ENSLBEP00000000086	Uncharacterized protein.	Si:ch211-134m17.9.	0.934
LOC109991206	ENSLBEP00000005157	ENSLBEP00000010545	ENSLBEP00000005157	Perforin 1.5.	C2 domain-containing protein.	0.831
LOC109991206	LOC110000372	ENSLBEP00000010545	ENSLBEP00000001499	Perforin 1.5.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.413
LOC109996803	LOC110003061	ENSLBEP00000000924	ENSLBEP00000024408	Si:ch211-1e14.1.	Family with sequence similarity 131 member Ba.	0.502
LOC110000372	LOC109991206	ENSLBEP00000001499	ENSLBEP00000010545	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Perforin 1.5.	0.413
LOC110000372	golga1	ENSLBEP00000001499	ENSLBEP00000038534	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Golgin A1.	0.437
LOC110000372	gper1	ENSLBEP00000001499	ENSLBEP00000031641	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.679
LOC110000372	hepacam2	ENSLBEP00000001499	ENSLBEP00000031560	G_PROTEIN_RECEP_F1_2 domain-containing protein.	HEPACAM family member 2.	0.449
LOC110000372	shld2	ENSLBEP00000001499	ENSLBEP00000000086	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Si:ch211-134m17.9.	0.417
LOC110000372	tmem200c	ENSLBEP00000001499	ENSLBEP00000019116	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.417
LOC110003061	LOC109996803	ENSLBEP00000024408	ENSLBEP00000000924	Family with sequence similarity 131 member Ba.	Si:ch211-1e14.1.	0.502
golga1	LOC110000372	ENSLBEP00000038534	ENSLBEP00000001499	Golgin A1.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.437
golga1	hepacam2	ENSLBEP00000038534	ENSLBEP00000031560	Golgin A1.	HEPACAM family member 2.	0.515
golga1	shld2	ENSLBEP00000038534	ENSLBEP00000000086	Golgin A1.	Si:ch211-134m17.9.	0.405
golga1	tmem200c	ENSLBEP00000038534	ENSLBEP00000019116	Golgin A1.	Uncharacterized protein.	0.458
golga1	zbtb33	ENSLBEP00000038534	ENSLBEP00000038479	Golgin A1.	Zinc finger and BTB domain containing 33.	0.524
gper1	LOC110000372	ENSLBEP00000031641	ENSLBEP00000001499	G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.679
hepacam2	LOC110000372	ENSLBEP00000031560	ENSLBEP00000001499	HEPACAM family member 2.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.449