(22 nodes) Phospholipase A2 activity, and Phosphodiesterase I activity network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109998586	Phospholipase A2, group XIIB. (183 aa)
	LOC109985465	LRAT domain-containing protein. (171 aa)
	pla2g15	Phospholipase A2, group XV. (421 aa)
	LOC109982045	Phospholipase A(2). (147 aa)
	LOC109979849	Ectonucleotide pyrophosphatase/phosphodiesterase 1. (802 aa)
	LOC109998103	PLA2c domain-containing protein. (595 aa)
	pla2g6	Phospholipase A2, group VI (cytosolic, calcium-independent). (794 aa)
	LOC109998188	Phospholipase A2 group III. (535 aa)
	LOC109976280	Phospholipase A2, group XIIA. (193 aa)
	PLA2G12A	Phospholipase A2 group XIIA. (193 aa)
	PLA2G12B	Phospholipase A2 group XIIB. (273 aa)
	LOC109981683	Phospholipase A(2). (149 aa)
	LOC109986374	Ectonucleotide pyrophosphatase/phosphodiesterase 2. (823 aa)
	LOC109990367	Phospholipase A(2). (154 aa)
	ENSLBEP00000031577	Si:dkey-177p2.18. (397 aa)
	LOC109999686	Bifunctional peptidase and (3S)-lysyl hydroxylase Jmjd7-like. (311 aa)
	LOC109998406	Glycerophosphodiester phosphodiesterase domain containing 3a. (315 aa)
	enpp6	Ectonucleotide pyrophosphatase/phosphodiesterase 6. (449 aa)
	LOC109996763	PA2c domain-containing protein. (138 aa)
	LOC109995676	Uncharacterized protein. (864 aa)
	LOC109995674	Uncharacterized protein. (855 aa)
	gdpd1	Glycerophosphodiester phosphodiesterase domain containing 1. (329 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000031577	LOC109976280	ENSLBEP00000031577	ENSLBEP00000019197	Si:dkey-177p2.18.	Phospholipase A2, group XIIA.	0.837
ENSLBEP00000031577	LOC109979849	ENSLBEP00000031577	ENSLBEP00000012867	Si:dkey-177p2.18.	Ectonucleotide pyrophosphatase/phosphodiesterase 1.	0.811
ENSLBEP00000031577	LOC109981683	ENSLBEP00000031577	ENSLBEP00000028695	Si:dkey-177p2.18.	Phospholipase A(2).	0.866
ENSLBEP00000031577	LOC109982045	ENSLBEP00000031577	ENSLBEP00000011556	Si:dkey-177p2.18.	Phospholipase A(2).	0.866
ENSLBEP00000031577	LOC109985465	ENSLBEP00000031577	ENSLBEP00000006789	Si:dkey-177p2.18.	LRAT domain-containing protein.	0.845
ENSLBEP00000031577	LOC109986374	ENSLBEP00000031577	ENSLBEP00000030027	Si:dkey-177p2.18.	Ectonucleotide pyrophosphatase/phosphodiesterase 2.	0.811
ENSLBEP00000031577	LOC109990367	ENSLBEP00000031577	ENSLBEP00000031226	Si:dkey-177p2.18.	Phospholipase A(2).	0.881
ENSLBEP00000031577	LOC109995674	ENSLBEP00000031577	ENSLBEP00000035037	Si:dkey-177p2.18.	Uncharacterized protein.	0.845
ENSLBEP00000031577	LOC109995676	ENSLBEP00000031577	ENSLBEP00000034936	Si:dkey-177p2.18.	Uncharacterized protein.	0.811
ENSLBEP00000031577	LOC109996763	ENSLBEP00000031577	ENSLBEP00000034548	Si:dkey-177p2.18.	PA2c domain-containing protein.	0.840
ENSLBEP00000031577	LOC109998103	ENSLBEP00000031577	ENSLBEP00000012906	Si:dkey-177p2.18.	PLA2c domain-containing protein.	0.839
ENSLBEP00000031577	LOC109998188	ENSLBEP00000031577	ENSLBEP00000018809	Si:dkey-177p2.18.	Phospholipase A2 group III.	0.832
ENSLBEP00000031577	LOC109998406	ENSLBEP00000031577	ENSLBEP00000032837	Si:dkey-177p2.18.	Glycerophosphodiester phosphodiesterase domain containing 3a.	0.841
ENSLBEP00000031577	LOC109999686	ENSLBEP00000031577	ENSLBEP00000032633	Si:dkey-177p2.18.	Bifunctional peptidase and (3S)-lysyl hydroxylase Jmjd7-like.	0.814
ENSLBEP00000031577	PLA2G12A	ENSLBEP00000031577	ENSLBEP00000020069	Si:dkey-177p2.18.	Phospholipase A2 group XIIA.	0.837
ENSLBEP00000031577	enpp6	ENSLBEP00000031577	ENSLBEP00000032940	Si:dkey-177p2.18.	Ectonucleotide pyrophosphatase/phosphodiesterase 6.	0.845
ENSLBEP00000031577	gdpd1	ENSLBEP00000031577	ENSLBEP00000036751	Si:dkey-177p2.18.	Glycerophosphodiester phosphodiesterase domain containing 1.	0.841
ENSLBEP00000031577	pla2g15	ENSLBEP00000031577	ENSLBEP00000010982	Si:dkey-177p2.18.	Phospholipase A2, group XV.	0.850
ENSLBEP00000031577	pla2g6	ENSLBEP00000031577	ENSLBEP00000014183	Si:dkey-177p2.18.	Phospholipase A2, group VI (cytosolic, calcium-independent).	0.853
LOC109976280	ENSLBEP00000031577	ENSLBEP00000019197	ENSLBEP00000031577	Phospholipase A2, group XIIA.	Si:dkey-177p2.18.	0.837